Vibrio syngnathi: K08M4_06220
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Entry
K08M4_06220 CDS
T09193
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
vsy
Vibrio syngnathi
Brite
KEGG Orthology (KO) [BR:
vsy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vsy03016
]
K08M4_06220 (truB)
Enzymes [BR:
vsy01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
K08M4_06220 (truB)
Transfer RNA biogenesis [BR:
vsy03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
K08M4_06220 (truB)
Prokaryotic type
K08M4_06220 (truB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
TruB-C_2
Motif
Other DBs
NCBI-ProteinID:
ARP37405
UniProt:
A0AA34TMX3
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All DBs
Position
1:646818..647771
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AA seq
317 aa
AA seq
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MARRRKGRPINGVILLDKPTGISSNDALQKVKRIYFAEKAGHTGALDPLATGMLPICLGE
ATKFSQFLLDSDKRYVVIAKLGERTNTSDSDGEVVETRDVNVTQEQLERCIASFKGETDQ
IPSMFSALKYQGKPLYEYARAGIEVPRESRKITVYSIELLRFEGDEVEMEVHCSKGTYIR
TITDDLGEMLGCGAHVTMLRRTGVAKYPYERMVTLEHLNEILEQAQAQEIAPKELLDPLL
MPMDTAVEDLPEVNLNAELTDLVQHGMPVQVAGAPTEGTVRMTSGEEKLFVGVAQIAEDG
RVAPKRLVVFRDEEPQA
NT seq
954 nt
NT seq
+upstream
nt +downstream
nt
atggctcgccgtcgtaaaggtcgccctatcaacggggtaattctgttagataagccaact
ggcatttcgtctaatgatgcactgcaaaaagtaaaacgtatttactttgcagagaaggca
gggcacaccggtgctctggatcctcttgcgactggcatgctgccaatttgtcttggtgaa
gcaacgaagttctcccagtttcttctagattctgataagcgctacgtagtaattgctaag
cttggtgagcgtaccaatacctctgactctgatggcgaagtggtagagacacgtgatgtt
aacgtgactcaagagcaacttgaacgctgcattgcaagcttcaaaggtgaaaccgaccag
attccatcaatgttctcagcattgaagtatcaaggtaagcctttgtatgaatacgcacgt
gcaggtatcgaggtgcctcgtgaatctcgtaagatcactgtttactctattgaactgctt
cgctttgaaggtgatgaagttgagatggaagtgcactgttctaaaggcacttacatccgc
acaattactgacgatcttggtgaaatgctaggttgtggtgctcacgtgaccatgcttcgt
cgtacaggtgtagcaaagtatccgtacgagcgtatggtgactttggagcatttgaacgag
atcctagagcaagcacaggcgcaagaaattgcaccgaaagagctgcttgatccactatta
atgccaatggacacagccgttgaagacttaccagaagttaacttgaacgcggaactgact
gacctagttcagcacggtatgccagttcaggttgctggtgcgccaacggaaggcacggtt
cgcatgacaagtggcgaagagaagctgtttgtcggcgtagctcagattgctgaagatggc
cgagttgcaccgaagcgtttggttgttttcagagatgaagagccacaagcgtaa
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