Vibrio syngnathi: K08M4_06240
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Entry
K08M4_06240 CDS
T09193
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
vsy
Vibrio syngnathi
Pathway
vsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K08M4_06240 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsy03019
]
K08M4_06240 (pnp)
03016 Transfer RNA biogenesis [BR:
vsy03016
]
K08M4_06240 (pnp)
Enzymes [BR:
vsy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
K08M4_06240 (pnp)
Messenger RNA biogenesis [BR:
vsy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
K08M4_06240 (pnp)
Transfer RNA biogenesis [BR:
vsy03016
]
Prokaryotic type
tRNA degradation factors
K08M4_06240 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
RNase_PH_C
KH_1
OB_RRP5_4th
S1_RRP5
KH_2
KH_SLS1_2
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
ARP37407
UniProt:
A0AA34XMJ2
LinkDB
All DBs
Position
1:648620..650740
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AA seq
706 aa
AA seq
DB search
MFEKPVVKSFQYGNHTVTLETGVMARQATAAVMATMDDTSVFVSVVAKKEAVAGQDFFPL
TVNYQERTYAAGKIPGGFFKREGRPSEGETLTARLIDRPIRPLFPSAFKNEVQVIATVVS
INPDVNPDMITMIATSAALAISGAPFNGPIGAARVGHIDGELVLNPSNTELENSKLDLVV
SGTEGAVLMVESEADNLSEEEMLSAVVYGHDQQQVVIKAINEFAAEVATPSWNWEAPAVN
TELKAKVAEQAETRLSDAYQITEKMARYEQVGAIKNDTVEALIAQDENLDEREIRGMLGS
LEKNVVRSRIIAGNPRIDGREKDMVRALDVRTGVLPRTHGSSLFTRGETQALVTATLGTQ
RDAQIIDSLMGEKKDNFLLHYNFPPYCVGETGFVGSPKRREIGHGKLAKRGIQAVMPSVD
EFPYTVRVVSEITESNGSSSMASVCGTSLALMDAGVPIKASVAGIAMGLVKEGDDFVVLS
DILGDEDHLGDMDFKVAGTNAGITALQMDIKIEGITKEIMQIALNQAQGARKHILSVMDE
AISGAREDISEFAPRIHTMKISSDKIKDVIGKGGAVIRALCEETGTTIEIEDDGTIKIAA
TEGAAAQEAIRRIEEITAEVEVGRIYQGKVARLADFGAFVTILPGKDGLVHISQIADKRV
EKVSDYLTEGQEVPVKVLEIDRQGRVRLSMKEAVETPAEGEAPAAE
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaaaaaccagttgtaaagtcattccagtacggtaaccacaccgttactctagaa
acgggcgtaatggcacgtcaagctactgctgctgtaatggcgactatggacgatacatca
gtattcgtttctgttgttgctaagaaagaagctgttgcgggtcaagatttcttccctcta
acagttaactaccaagagcgtacatacgctgcgggtaaaatccctggtggtttcttcaag
cgtgaaggtcgtccatctgaaggcgaaacactaacagctcgtctgattgaccgtccaatt
cgtccacttttcccaagtgcgtttaaaaacgaagttcaagttatcgctacggttgtttct
atcaaccctgacgtaaacccagacatgatcactatgatcgcaacgtctgctgctcttgct
atctctggtgcaccattcaatggtcctatcggtgctgcacgtgttggtcacatcgacggc
gaacttgttcttaacccatcaaatactgagcttgaaaactctaaactagacctagttgtg
tctggtacagaaggcgcagtacttatggttgaatctgaagcagataacctatctgaagaa
gaaatgctttcagctgttgtttacggtcacgatcaacaacaagttgtaatcaaagcgatc
aacgagtttgctgctgaagttgcaactccatcttggaactgggaagcgccagcagttaac
actgagcttaaagctaaagttgctgagcaagctgaaactcgtctatctgacgcgtaccag
atcactgagaaaatggctcgttacgagcaagttggcgcaatcaagaacgacactgttgaa
gctctaattgcacaagacgaaaacctagatgagcgcgaaatccgcggcatgcttggttct
ctagagaaaaacgtagtacgtagccgcatcattgctggtaacccacgtatcgatggccgt
gaaaaagacatggttcgtgcgctagacgtacgtactggtgttcttccacgtacacacggt
tcttctctattcactcgtggtgaaactcaagcacttgttactgcaacgcttggtacacaa
cgtgatgcacaaatcatcgacagcctaatgggtgagaagaaagacaacttccttctacac
tacaacttccctccatactgtgtaggtgaaactggtttcgttggttctcctaagcgtcgt
gaaattggtcacggtaagcttgctaaacgtggtatccaagcagtaatgccttctgttgac
gaattcccatacacagttcgtgttgtatcggaaatcactgaatctaacggttcttcttca
atggcttctgtatgtggtacatctctagcacttatggatgctggtgttccaatcaaagct
tctgttgcgggtatcgcaatgggtcttgttaaagaaggcgacgatttcgttgttctttct
gacatccttggcgacgaagatcacctaggtgacatggactttaaagtagcaggtactaac
gctggtatcactgcacttcaaatggacatcaagatcgaaggtatcactaaagagatcatg
caaattgcacttaaccaagcgcaaggtgcacgtaagcacatcctttctgtaatggatgaa
gctatctctggtgctcgtgaagatatctctgaattcgctccacgtatccacacaatgaaa
atcagctctgataagatcaaagatgttatcggtaaaggcggcgcagttatccgtgctctt
tgtgaagaaacaggtactacaatcgaaatcgaagacgatggcacaatcaagattgctgct
actgaaggcgcagctgctcaagaagctatccgtcgtatcgaagagatcactgctgaagtt
gaagttggccgcatttaccaaggtaaagttgctcgtctagctgacttcggtgcattcgtt
actatccttccaggtaaagatggtctagtacacatctctcaaatcgctgacaagcgtgtt
gagaaagtgtctgactacctaactgaaggtcaagaagtaccagttaaggttcttgaaatt
gaccgtcaaggccgtgtacgtctaagcatgaaagaagcagttgaaacgccagctgaaggc
gaagcacctgctgctgagtaa
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