KEGG   Vibrio syngnathi: K08M4_06960
Entry
K08M4_06960       CDS       T09193                                 
Symbol
ribD
Name
(GenBank) Riboflavin biosynthesis protein RibD
  KO
K11752  diaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase [EC:3.5.4.26 1.1.1.193]
Organism
vsy  Vibrio syngnathi
Pathway
vsy00740  Riboflavin metabolism
vsy01100  Metabolic pathways
vsy01110  Biosynthesis of secondary metabolites
vsy01240  Biosynthesis of cofactors
vsy02024  Quorum sensing
Module
vsy_M00125  Riboflavin biosynthesis, plants and bacteria, GTP => riboflavin/FMN/FAD
Brite
KEGG Orthology (KO) [BR:vsy00001]
 09100 Metabolism
  09108 Metabolism of cofactors and vitamins
   00740 Riboflavin metabolism
    K08M4_06960 (ribD)
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    K08M4_06960 (ribD)
Enzymes [BR:vsy01000]
 1. Oxidoreductases
  1.1  Acting on the CH-OH group of donors
   1.1.1  With NAD+ or NADP+ as acceptor
    1.1.1.193  5-amino-6-(5-phosphoribosylamino)uracil reductase
     K08M4_06960 (ribD)
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.4  In cyclic amidines
    3.5.4.26  diaminohydroxyphosphoribosylaminopyrimidine deaminase
     K08M4_06960 (ribD)
SSDB
Motif
Pfam: RibD_C dCMP_cyt_deam_1 MafB19-deam Inv-AAD
Other DBs
NCBI-ProteinID: ARP37479
UniProt: A0AA34TMI3
LinkDB
Position
1:726265..727374
AA seq 369 aa
MSNFTPLDFQMMSRAIQLAKRGIYTTAPNPNVGCVIVQTDGQVVGEGFHAKAGEPHAEVH
AMRMAGDKAKGATAYVTLEPCSHYGRTPPCAEGLIKAQVAKVICAMQDPNPKVAGRGIKM
LRDAGIEVEIGLLEQDALDLNPAFIKRMQTGMPFVQLKMAASLDGQTALGNGQSQWITSP
EARRDVQNYRAKSGAVLSTSQTVIEDNASLNVRWTELPSSIKDHYAEDELRQPIRVILDR
QNQLRPELRLFQTPTSVLRVAEASADITVGTTDAGQLDLHDLMRQLPANHIDHVWVEAGA
TLAKSLIEAQLVDELILYLAPKLMGSDGRGLMGALGLTSMSDVIDLEIKDVRQVGVDIRI
VAKPVFRNR
NT seq 1110 nt   +upstreamnt  +downstreamnt
atgtctaactttactcccttagattttcaaatgatgtcgcgtgctattcagttagcaaaa
cgcggcatttataccacggcacccaacccgaatgtgggctgtgtcatagtacaaaccgat
ggtcaggtcgttggcgaaggtttccatgccaaagcaggcgaacctcatgccgaagtgcac
gctatgcgaatggccggcgataaggcaaaaggtgcgaccgcttatgtcacgctagaacct
tgttcgcactatggtcgaacgccaccttgtgctgaaggtttgattaaggctcaagttgcg
aaagtgatttgcgccatgcaggacccaaacccaaaagtcgcgggccgtggtattaagatg
ctacgcgacgcgggtatcgaggttgaaattggtttgcttgagcaagatgctctcgatttg
aatcctgcatttatcaagcgtatgcaaaccggcatgccatttgttcaattaaagatggcc
gctagcctcgatggccaaacggcattgggaaatggtcaaagccagtggatcacctcgcca
gaagcgcgtcgtgatgttcagaactaccgagcaaaatcaggcgctgtgttatcaactagc
caaacggtgattgaagacaacgcgtcgttgaatgttcgctggactgagttaccaagcagt
attaaagatcattacgctgaagacgaactgcgtcagccgattcgcgtgatccttgatcgt
caaaaccaacttcgccctgaactcagattatttcagactccaacatcggtattgagagta
gccgaagcgtctgctgatattacagtcggaactacagatgctggtcagcttgatttacac
gatctgatgcgtcaattacctgcgaaccatattgatcatgtttgggtcgaagcgggtgcg
acattggcaaaaagcttgattgaagcgcagctagtggatgagctaatcctctatttagca
cctaaacttatgggcagtgacggacgaggtttgatgggcgcattagggctcacttcaatg
tctgatgtgattgacctagaaattaaagatgttcgacaggttggtgtggatattcgcatc
gtagcgaaacccgtatttcgaaatcgatag

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