Vibrio syngnathi: K08M4_13880
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Entry
K08M4_13880 CDS
T09193
Symbol
sbcD
Name
(GenBank) Nuclease SbcCD subunit D
KO
K03547
DNA repair protein SbcD/Mre11
Organism
vsy
Vibrio syngnathi
Brite
KEGG Orthology (KO) [BR:
vsy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vsy03400
]
K08M4_13880 (sbcD)
DNA repair and recombination proteins [BR:
vsy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
K08M4_13880 (sbcD)
Archaeal homologous recombinant proteins
K08M4_13880 (sbcD)
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Gene cluster
GFIT
Motif
Pfam:
SbcD_C
Metallophos
Metallophos_2
DUF6761
Motif
Other DBs
NCBI-ProteinID:
ARP38143
UniProt:
A0AA34TPE7
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Position
1:1496753..1498006
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AA seq
417 aa
AA seq
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MKILHTSDWHLGQNFYNKSRKNEHEQFLQWLLEQVTEHDIDAIIVAGDIFDTSTPPSYAR
EMYNKFVVDSNKIGCQLVLLGGNHDSVSVLKETQQLLKYMGADVIPNTNEDHATQVVELK
GKNGDVEALVCAIPFIRPRDVLTSQAGVTGVERQKQLGDAIKQHYQSVYDAAVEKRATFE
NSEHMPIIATGHLTAMGVQQSDSVRDIYVGNLDGFAADGFPDADYIALGHIHRPQVVAKR
EYIRYCGSPIPLSFDELKSQKQVCVVEFIEGERTISQLPVPTFQPLAEIKGDLSEIESQL
NQYIGLDSDQSVWLSIEVQAQDYLSDLQERMRALTEGLNVEVLQLRRARERRNQALEQES
AETLSELSPMDVFTKRIALEEFETDSEKARLERMTVKFKQVMVEVSESAQAPNKVEE
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgaagattcttcacacgtcagattggcaccttggccaaaacttctacaataaaagccgt
aagaatgaacatgaacagttcttacaatggttacttgagcaagttacagagcacgacatc
gacgcgatcattgttgctggcgacattttcgataccagcacaccgccgagttacgctcgt
gagatgtataacaagttcgtggtcgattcgaacaagatcggctgccaattggtgttatta
ggtggaaatcacgattccgtttctgtattaaaagagacacaacagctgctcaaatacatg
ggcgcagacgtaattcctaataccaatgaagatcatgcgactcaggttgtcgaactaaaa
ggcaagaacggcgatgtagaagcgctggtttgtgccattccttttattcgccctcgcgat
gtattgactagtcaggcgggtgtcactggcgttgagcgtcagaagcagcttggcgatgca
atcaaacagcactaccaaagtgtttatgatgccgctgtagaaaaacgtgcgacgtttgaa
aacagtgagcacatgccgattatcgctacgggtcatttaacggcgatgggcgttcaacaa
tcggattcggtacgcgacatctatgttggtaaccttgatggttttgccgctgatggcttc
ccagacgcagattatattgcacttggtcatatccaccgcccacaagtggtagcaaagcgt
gaatacattcgttactgcggctcaccaattccattaagctttgatgaacttaaatctcaa
aagcaggtatgtgtggttgagtttattgagggcgagcgcaccatttctcaattgccagtt
ccaacgttccaacccctagctgaaatcaaaggcgacttgagcgagatcgaatctcaactg
aatcaatatataggcttagatagcgaccaaagcgtgtggttatcgatagaagtgcaagcg
caagattacttgtcggatcttcaagaacgtatgcgcgcactaaccgaaggtttgaatgtg
gaagtgcttcaattgcgccgcgcaagagaacgccgtaaccaagctttagagcaagagtcg
gcagaaacactgtcagaattgagcccgatggacgtgtttacgaagcgtattgccttagaa
gaatttgaaaccgattctgaaaaagcgcgtttagagcgcatgacggtgaagtttaaacaa
gtgatggttgaagtgtctgagagcgctcaagcgccaaacaaagtagaagagtaa
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