Vibrio syngnathi: K08M4_13890
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Entry
K08M4_13890 CDS
T09193
Symbol
sbcC
Name
(GenBank) Nuclease SbcCD subunit C
KO
K03546
DNA repair protein SbcC/Rad50
Organism
vsy
Vibrio syngnathi
Brite
KEGG Orthology (KO) [BR:
vsy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
vsy03400
]
K08M4_13890 (sbcC)
DNA repair and recombination proteins [BR:
vsy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
K08M4_13890 (sbcC)
Archaeal homologous recombinant proteins
K08M4_13890 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
AAA_21
ABC_tran
SMC_N
TPR_11
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ARP38144
UniProt:
A0AA34TNR0
LinkDB
All DBs
Position
1:1498012..1501728
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AA seq
1238 aa
AA seq
DB search
MKILSLEFENLNSLKGRWKLDFTQSPFAENGLFAITGPTGAGKTTILDAICLALFHRTPR
LKSIAKGNNELMTRGTGECFAELEFEVQGKTYRSNFHQKRARGKHDGALQTPTCEFADAD
TDKVLETMLTKKTKLVEQVTGLDFSRFTKSIMLSQGEFAAFLNANANDRAELLEELTGTE
VYSLISERIYDHFKSSEESLNHLKAKAEGVSLLSEEQIKELTAERETLEAEQKRLAEQLK
EWQAHLSWWKDVTKAEQTIAASEHDLKSTQDELDRNQPSLERLANSEPAEKLRPMHKDLK
RCEQEVNTTQANLDNSTKLLEARDAEKKDAQTQLTQSSDAVQKIKTEQQDQEKIIEQVRP
LDNQIAVLKDKQTAAVNAANKLNEQHTQQRNQQVDLVQKTDALKQQYQLSTEYLNTHQAD
QHLEKYLGQWQAKVEQVRTLERQHSEQLNSAKQALSAVDAQQTIIKSAQEAKVTQDKTLA
ELVVLESSAKQQWEALQGNTSEQVLNAQKDLLEFWNRNTHSLLEINRGFLNAQQQLHAKT
QAHQTNTQKVDKLSKEREVLVDRYKERETSLERLTRLIDQEGELAKYRAALESGSECPLC
GSTDHSIEQSQDIANLVAQKEREKHELAIIKKDGQEHRQQLDSLAPMVAALNDDIRRAQA
DIQQAQLNWQGVIGKLQQSLSDFVGTAPELALLTINDLGNEATVATFAQQCEVQLSQSSQ
QLKALADAKAHYAEAEKQRLSVSVMADKAQSNLELAEQRLADLNKQNHNTNEQVAQIAQA
KEQQWNALKESIVQTAIEAPELEHIDDWFTAKSQASSTWQQTKQQQADIEKQLITQSAEL
KTLDDKLSSAEKELATLTQQSESLVSELTRVTAERTELFGDKDIQATSNAMKQKVTEAVN
AFDAAQLVLNRCELEHRTEQTKHISFSEALTSKQSSYTQAINAWLEALKISPFEDEANFE
AALLDEEVRTQLQSLKKSLDEAIVSANTRLNTAKAAQVELQNHENAKAWQEQDQQQVEQA
TTECQNAQQSHATKIGAISANLETDSQNRSNQQDLFKQIDEQQVEFDDISRLNSLIGSKN
GDKFRKFAQGLTLENLVYLANKQLQRLHGRYELKRKADDGLELQVLDTWQGDVMRDTKTL
SGGESFLVSLALALALSDLVSYKTSIDSLFLDEGFGTLDSDTLDIALNALDNLNASGKMI
GVISHVEALKERVPVQLKVTKHSGLGVSEMEKQYKVVT
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atgaagattttaagcctagaatttgaaaacctgaactctttgaaaggacgttggaagctc
gattttacccaatcaccgtttgcggaaaatggcttgtttgcgattactggcccaacaggg
gcgggtaaaaccaccattcttgacgcgatttgtttggcattgttccaccgcacgccgcgt
ttgaaaagtatcgccaaaggcaacaacgaattaatgacgcgtggcacgggtgagtgtttt
gctgaactggagtttgaagtacagggcaaaacgtatcgctctaacttccaccaaaagcga
gctcgtggaaaacacgatggcgcattacaaacaccaacgtgcgaatttgcggatgcggac
accgacaaagtcttagagaccatgctgaccaagaagaccaagttagtggagcaggtaacc
ggtctcgatttctcacgcttcactaaatcgattatgttgtctcagggtgagtttgcggcg
ttcttaaatgccaatgctaacgaccgtgccgagctacttgaagagctgacgggtacagaa
gtctatagcctgatctctgagcgcatctacgatcatttcaagtcgagtgaagagtcgctt
aatcaccttaaagcgaaagcagaaggtgtgagcttactgtctgaagagcaaatcaaagag
ctaaccgcagaacgagaaacgctagaagccgagcagaagcgtttagccgagcaattaaaa
gagtggcaagcgcatctaagctggtggaaagacgtgaccaaagctgagcaaactattgcg
gccagtgagcacgaccttaaaagcactcaagatgaactagaccgtaaccaaccttcacta
gagcgtttggcaaacagtgagccggctgaaaagctgcgcccaatgcacaaagatttaaag
cgttgcgaacaagaggtaaacaccactcaagctaacctagataacagcaccaagttactt
gaagctcgtgatgcagaaaagaaagacgcgcaaactcaactgactcaaagcagtgacgct
gttcagaagataaaaaccgaacaacaagatcaagagaagatcattgaacaggttcgtcct
ctagataaccaaattgccgtactcaaagataagcaaacggcggccgttaatgcagcgaat
aagctaaacgagcaacacacgcagcagcgtaatcaacaggtcgatttagttcaaaaaact
gatgcactgaagcaacaatatcaactcagcactgagtacttaaatacgcatcaagctgac
caacatctggaaaaatacttaggtcaatggcaagcaaaggtagagcaagttcgtaccctt
gagcgtcagcattcagaacaactaaattcagcgaagcaagctttgtctgcggttgatgca
cagcaaacgatcatcaaatctgcgcaagaagctaaagtcacgcaagataaaactttagct
gaattggttgtgctagagagtagtgcaaagcaacagtgggaagccttgcaaggcaatacc
agtgagcaagtgttgaatgcgcaaaaagatctgttggagttttggaatcgcaatacgcac
tcattacttgagatcaatcgtggtttcctaaatgcccaacaacaactgcacgcaaaaaca
caggctcatcaaacgaacactcagaaagtcgacaagctttcgaaagagcgtgaagtgttg
gtggatcgatataaagagagagagacgtctcttgaacgattaacgcgtttgattgatcaa
gaaggcgaattggcaaaataccgagcagctttagaatcgggatctgagtgcccattgtgt
ggttcaactgaccattcgattgaacagtcgcaagacattgcaaatttggttgctcaaaaa
gagcgtgaaaagcatgagttagcgatcatcaagaaagacggtcaagagcatcgtcaacag
ctagattctcttgcccctatggttgcggcgcttaacgatgacattcgacgtgcgcaagcg
gatattcagcaggctcaactgaactggcaaggtgtaatcggcaagcttcaacagagctta
tcggatttcgttggcacggctcctgaattggcgctgctaacgattaatgatttaggtaat
gaagctacagtcgcgacctttgctcagcagtgtgaagttcaactaagtcagagctcacag
caactcaaagcgttggctgatgctaaagcgcattacgccgaagctgagaaacaacgcttg
tctgtaagtgttatggctgacaaggcgcagtctaaccttgaactggccgagcaacgctta
gcggatctgaataagcaaaaccacaacacaaatgaacaagtggctcagatagctcaagcg
aaagaacagcaatggaacgctttgaaagagagcattgttcaaacggctatcgaagcacct
gaacttgagcatattgatgattggtttactgcgaaatcgcaagcatcaagcacatggcag
caaactaaacagcaacaggccgatattgagaagcaactgattactcaaagtgccgaactg
aaaaccttagatgacaagctaagtagcgcagagaaagagctcgcgacactgacgcaacag
agtgagtctttagtgtcagaactcactcgtgtaacggctgaaagaacagagttgtttggt
gacaaagacattcaagccaccagcaatgcgatgaagcaaaaagtcactgaagcggtaaat
gcatttgatgccgcgcagttagtgcttaaccgttgcgagctggaacatcgaactgagcaa
accaaacacattagcttctctgaagcgttgaccagtaagcagtcaagttacacacaagcg
ataaatgcttggctagaagcgctgaaaattagcccatttgaagatgaggctaattttgaa
gcagcgttgttagacgaagaagttagaactcaacttcaaagcctgaagaagtctttagat
gaagcgattgtcagtgcgaatacaaggttgaacacagctaaagcggcgcaagtggagcta
caaaaccacgaaaatgctaaagcatggcaagagcaagaccaacagcaagttgaacaagcg
accactgagtgtcaaaacgcacaacaaagccatgcgaccaagatcggcgcgatttctgcc
aatctagaaacggatagtcagaatcgtagtaatcagcaagatctgttcaagcagatcgac
gagcagcaggtcgagtttgatgatatttcacgtctgaactcacttatcggctctaagaac
ggcgacaagttccgtaagtttgcccaaggtctaacactagagaatttggtgtaccttgcg
aacaagcagctgcagcgtttgcatggtcgttatgagctaaaacgtaaagccgatgatggc
ttagaactgcaagtgctcgacacatggcagggcgatgtgatgcgtgacactaagactttg
tcgggcggcgaaagcttcttggtgagtttggcgttggcattagcgctttctgatcttgtg
agctacaaaaccagtattgattctctgtttctagatgagggtttcggaacgctcgatagt
gacacattggacattgccctaaacgcgctcgataacctgaatgcgtctggcaagatgatt
ggtgtcattagtcacgttgaagcgctgaaagagcgagtacccgttcagcttaaagtaaca
aaacactctggcttaggtgtgagtgagatggagaagcagtataaggttgtgacttag
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