Vibrio syngnathi: K08M4_26950
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Entry
K08M4_26950 CDS
T09193
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vsy
Vibrio syngnathi
Pathway
vsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K08M4_26950 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsy03019
]
K08M4_26950 (rnr)
03016 Transfer RNA biogenesis [BR:
vsy03016
]
K08M4_26950 (rnr)
Enzymes [BR:
vsy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
K08M4_26950 (rnr)
Messenger RNA biogenesis [BR:
vsy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
K08M4_26950 (rnr)
Transfer RNA biogenesis [BR:
vsy03016
]
Prokaryotic type
tRNA degradation factors
K08M4_26950 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
SRP-alpha_N
Motif
Other DBs
NCBI-ProteinID:
ARP39401
UniProt:
A0AA34TQT7
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All DBs
Position
1:complement(2984915..2987416)
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AA seq
833 aa
AA seq
DB search
MSKNTPMSENTTATTTVDPFADRESKNYENPVPSREFIISFLTDANIPMNRNDLFEALGL
AGEEQYEGLRRRLRAMERDGQLIFTRRQCYALPEKMELIKGFVIGHKDGHGWVRPDGSVG
KDNDIVLPHHQMKTIMHGDYVLVQPTDNSKRGRREGRLVRVLEERKTPLVGRFFLEYGHS
YVVADDSRISHDIQIPTEHKGGARMGNVVVIEITDRGGRSRNMMGKVTEVLGENMAPGME
TQIAIRTHQIPQEWPEAVDKQIVNLGEHVPEEAKEGRVDLRKLPLVTIDGEDARDFDDAV
YCEAKKGGGWRLWVAIADVSYYVRPETALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCS
LNPQVDRLCMVCEMTISDKGKLSGYKHYEAVMNSHARLTYNKVGAILDGNEELRERYEPE
VPHLEELHKMYKVLKKTRDERGAIEFETVETKFIFNADRKIDRIEPVIRNDAHKIIEECM
ILANIASASYVEKAKEPALYRVHDTPGEERLMGFKSFLSELGLTLEGGLSPSPVDYAQLM
QQINEREDRELIQTMLLRSMKQAVYNADNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIK
YLIAKEEGRNSERWTPTGGYHYTFDDMDFYGEQCSMTERRADDATREVNDWLKCEYMQDH
VGEVMDGVIANVTGFGFFVRLTELHIDGLVHISALANDYYQFDAVGQRLVGESSGNIYRL
GDSVKVKVSAVNLETRQIDFDLEDTDRQPRGKGKTAKKRAAEAMKKAKSKKRSAVKSNKP
GVPATPLVEPTKRPDGSSEGSAKKKKPANKTGAAKARAKKKRAASRKPKADKS
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaaacacaccaatgtcagaaaacacgacagcgacaaccactgttgatcctttt
gccgaccgagagtcgaaaaattacgaaaacccagtaccaagccgtgagttcattatttcg
tttctaacagacgcgaatattcctatgaaccgcaatgatctattcgaagctttgggtttg
gctggagaggaacaatatgaagggctgcgtcgtcgtttacgtgcaatggaacgtgatgga
cagcttatctttactcgtcgtcagtgttacgcattgcctgagaagatggaattgattaaa
ggctttgtgattggtcataaagatggtcatggttgggtacgcccagacggcagtgttggt
aaagataacgatatcgtgctgccgcatcatcagatgaaaaccatcatgcacggtgattac
gtattggttcagcctactgacaacagtaagcgtggtcgtcgtgaaggccgtttggttcgt
gttcttgaagagcgtaaaacgccacttgttggtcgcttcttcctagagtacggccattct
tatgtggttgctgatgattcgcgtattagtcacgacatccagatcccaactgagcataaa
ggcggtgctcgaatgggtaatgtggttgtgattgaaattacggaccgtggtggtcgttct
cgtaacatgatgggtaaagtgaccgaagttcttggtgaaaatatggctccgggtatggaa
acgcagatcgcgatccgtactcaccagatcccacaagagtggcctgaagcggtagataag
caaatcgtaaacctaggtgaacatgttcctgaagaagcaaaagaaggacgtgttgatcta
cgcaaactcccattggttactatcgatggtgaagatgcgcgagacttcgatgatgcggtt
tactgtgaagcgaagaaaggcggcggctggcgtctatgggtagcgattgctgacgtaagt
tactacgttcgcccagagacagctctagacaaagaagcgattaaccgtggtaactcggta
tacttcccgtcacaagttgtcccaatgctgccagaagtactttcaaatggtttgtgttca
ttgaaccctcaagtcgaccgtttgtgtatggtgtgtgagatgactatctcagacaaaggt
aaactgtcaggctacaagcactacgaagcagtcatgaattctcatgctcgtcttacttac
aacaaagtaggcgcgatcttagatggcaatgaagaattacgtgagcgttacgaaccagaa
gtaccacatcttgaagagcttcataagatgtacaaggtgcttaagaaaacgcgtgacgaa
cgtggtgcgattgaatttgaaacggtagaaactaagtttatcttcaatgcggatcgtaag
attgaccgtattgagccggtaattcgtaacgatgcacacaagatcatcgaagaatgtatg
attcttgcgaatatcgcttctgcatcttacgtagaaaaagcgaaagagcctgcgttgtac
cgtgttcacgatactccgggtgaagagcgcttaatgggcttcaagagcttcttaagtgaa
ttaggtttaacgctggagggtggtctgtcgccatctccggtagactacgcacaactgatg
caacagattaacgaacgtgaagaccgtgagttaatccaaactatgctgctgcgctcaatg
aagcaagcggtatacaatgcggataacgcgggtcactttggtctagctcttaagcgctat
gctcactttacctcgccaattcgtcgttacccagatttgctattgcaccgtgcgattaag
taccttattgcgaaagaagaaggccgtaacagcgagcgttggacgccaaccggtggttac
cactacactttcgatgatatggacttctacggcgaacagtgttcaatgactgagcgtcgt
gctgatgatgctacgcgtgaagtgaacgactggctgaaatgtgaatacatgcaagaccat
gttggcgaagtgatggatggcgtgattgccaacgtgactggcttcggtttcttcgtgcgt
ctaacggaactgcacatcgatggtctggtacatatttccgcgctagcgaatgactactac
caatttgatgctgttggtcagcgtctagtgggtgaaagctcaggtaatatctaccgcttg
ggtgattcggttaaagtgaaggtttcggcagttaacttagaaactcgtcaaatcgacttt
gatttagaagacacagatcgtcagccgcgtggtaaaggtaaaacagccaagaagcgtgca
gcagaagcgatgaaaaaggcgaaaagcaagaagcgttcagcggtgaagagcaataagcca
ggcgtacctgcaacgcctttagttgaaccaactaaacgacctgatggaagtagcgaaggt
tcagctaagaagaaaaagccagcgaataaaacgggtgctgctaaagctcgtgcgaagaaa
aagcgcgccgcaagccgtaagccaaaggctgataagtcttaa
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