Vibrio syngnathi: K08M4_28680
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Entry
K08M4_28680 CDS
T09193
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
vsy
Vibrio syngnathi
Pathway
vsy03030
DNA replication
vsy03410
Base excision repair
vsy03420
Nucleotide excision repair
vsy03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vsy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K08M4_28680
03410 Base excision repair
K08M4_28680
03420 Nucleotide excision repair
K08M4_28680
03440 Homologous recombination
K08M4_28680
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vsy03032
]
K08M4_28680
03400 DNA repair and recombination proteins [BR:
vsy03400
]
K08M4_28680
Enzymes [BR:
vsy01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
K08M4_28680
DNA replication proteins [BR:
vsy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K08M4_28680
DNA repair and recombination proteins [BR:
vsy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
K08M4_28680
NER (nucleotide excision repair)
GGR (global genome repair) factors
K08M4_28680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
DNA_pol_A_exo1
5_3_exonuc
DNA_polI_exo1
HHH_5
WHD_BrxR
Motif
Other DBs
NCBI-ProteinID:
ARP39559
UniProt:
A0AA34XPU2
LinkDB
All DBs
Position
1:complement(3164592..3167390)
Genome browser
AA seq
932 aa
AA seq
DB search
MARIPDNPLILIDGSSYLYRAFHAYPGTMSNGDIPTNAVYGVVNMLRSMMRQFASDRIAV
IFDAKGKTFRDDMYPEYKANRPPMPDDLRCQIEPLHNVIRAMGLPLISIPGVEADDVIGT
LASQASAMGMPVLISTGDKDMAQLVDDNVTLINTMTNVVMDREGVIEKFGIPPELIIDYL
ALMGDKVDNIPGVPGVGDKTATALLQGIGSIEKLYQNLDDIAALGFRGSKTMAKKLADNK
ANADMSYELATIKLDVELEETPESLVKAQPNIDELIKLYGQLVFKSWLNELLEGGSGVVE
ADEKSGSVRSSASATTSTVEMNTSAVTIDRSNYETILDEASFNVWLEKLKAAELFAFDTE
TDSLDYMVANLVGLSFATEEGVAAYVPVAHDYLDAPQQLGRDWVLEQLKPILEDDAQAKV
GQNLKYDMSVLARYGIEMKGIKHDTMLASYVFNSVGGKHDMDSLALRFLQHSCISFEQIA
GKGKKQLTFNQIELGEASPYAAEDADVTLRLHNRLMENIEQDEKLKTIYEEIEVPLIPVM
SRIERTGVFIDDMLLGAQSQEIAVRLDELEQKAYEIAEQEFNMNSPKQLQAILFEKMGLP
VIKKTPSGAPSTNEEVLQELALDYPLPKLIIEYRGLAKLKSTYTDKLPKMINAETGRVHT
SYHQAVTATGRLSSTDPNLQNIPIRNEEGRRIRQAFVAQHGWKILAVDYSQIELRIMAHL
SGDKALLEAFQQGKDIHAATAAEIIGVAIDQVTTEQRRRAKAVNFGLIYGMSAFGLAKQL
GIPRGEAQHYMDTYFERYPGVMQYMEDTRSAASEQGFVETIYGRRLHLPEIQSRNGMRRK
AAERAAINAPMQGTAADIIKKAMLLVDEWIQAEGDGRVKLLMQVHDELVFEVEESALAEI
ESKVQQLMESAAELEVPLVAEAGHGDNWDQAH
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggctcgtattcctgataatccattgatcctgattgatggctcttcttacctatatcgc
gcgttccatgcttaccctggcaccatgagtaatggtgatatcccaaccaacgctgtttac
ggtgtggttaacatgctacgtagcatgatgcgtcaatttgcttctgatcgtattgctgta
atttttgatgcgaaaggaaagacgttccgtgatgacatgtacccagagtacaaagcaaac
cgtccacccatgcccgatgaccttcgttgccaaatagaaccgctgcacaatgtgattcga
gcaatgggcttgccacttatctctattcccggtgttgaagcggatgatgtgattggtacg
cttgcttctcaagcttctgcgatggggatgccggtacttatcagtactggtgataaagat
atggcgcagttagttgatgacaacgttactctgatcaacaccatgaccaacgtggtaatg
gatcgcgaaggtgtgattgagaagtttggtatcccgccagaactgatcatcgattacttg
gcactgatgggcgataaagtcgataacatccctggtgttccgggtgtcggtgacaagaca
gcgacggctttactacaaggcattggtagtatcgaaaagttgtatcagaatcttgatgat
attgcggcgcttggtttccgcggttcgaagacgatggctaagaagctggctgataataaa
gccaatgctgacatgtcctacgagcttgcaacaatcaagctagatgttgagcttgaagag
acgcctgagtcattggtaaaagcacaacccaatatcgatgagttgatcaagttatacggt
caactggtctttaaatcttggttgaacgagctgcttgaaggcggcagtggtgtggttgaa
gctgatgaaaaatcgggatcagtacgcagcagcgcttctgcaacaacgtctactgtagag
atgaatacgtctgctgtgacgattgatcgcagtaactacgaaacgattctagatgaagcg
tcattcaatgtttggttagaaaagcttaaagcagctgaattgtttgcttttgatactgag
acagacagccttgattacatggtcgcgaatctagtcggtttatcatttgcgacggaagag
ggcgttgccgcttacgtaccagttgctcatgattacctagatgcaccgcaacagctgggt
cgtgattgggtacttgaacaacttaaaccgattcttgaagatgatgctcaagctaaagtg
ggtcaaaacctgaagtacgatatgagtgtgctagcgcgctacggtatcgagatgaagggc
atcaaacacgacactatgttggcttcttacgttttcaatagcgtaggtggcaagcacgat
atggacagcctagcgctacgcttcctacagcatagctgcatctcatttgagcaaattgca
ggtaaaggtaagaaacaacttactttcaaccagattgagctgggtgaagcgtctccatac
gctgcagaagatgctgacgtgacactacgtctgcataaccgcctaatggaaaacattgag
caagatgaaaagcttaaaaccatttatgaagaaatcgaagtaccactgattcctgtgatg
tctcgcattgagcgtactggcgtattcatcgatgacatgctgttaggggctcaatcgcaa
gagatagcggttcgtctggatgagttagagcagaaagcttacgagattgcagagcaagag
ttcaacatgaactcgccaaaacaactgcaagcgatcctgtttgagaaaatgggtctgcca
gttatcaagaaaacgccatcaggtgcgccttcaactaacgaagaagtgttgcaagagctg
gcccttgattacccgttgcctaagctgatcattgagtatcgtggcttggcgaaactgaag
tctacttacaccgataaattgccgaagatgatcaacgctgaaacgggtcgcgttcatact
tcttatcaccaagcggtaacggcaaccggtcgtttgtcttcgactgatccaaacctacaa
aatatcccaattcgtaatgaagaaggtcgtcgtattcgccaagcattcgttgcacaacat
ggttggaagatcctagcggtcgattactctcaaattgaattgcgtatcatggcgcaccta
tcgggtgataaagcgctgctggaagcgttccaacaaggcaaagatattcacgcggcaacg
gctgctgagattatcggtgtggctattgatcaagttaccactgaacagcgtcgtcgtgct
aaagccgttaacttcggtcttatttacggcatgagtgcctttggcttggctaagcaactg
gggattcctcgtggtgaagcacagcactacatggacacttactttgaacgttaccctggt
gtaatgcagtacatggaagacacacgcagtgctgcttcagagcaaggcttcgttgaaacc
atttacggtcgtcgattgcaccttcctgaaattcaatctcgtaatggcatgcgtcgtaaa
gcggctgaacgtgcggcgatcaacgcaccaatgcaaggcacagctgctgacattattaag
aaagcgatgctgctagtggatgagtggattcaagcggaaggtgatggtcgtgtgaaactg
cttatgcaagtacacgatgaattggtcttcgaagtggaagagtcagctttagccgaaatt
gaaagtaaagtacaacaattgatggaatccgctgcagagctagaagtaccgctggtcgcg
gaagctggccacggtgacaactgggatcaagcccactaa
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