Vibrio syngnathi: K08M4_40380
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Entry
K08M4_40380 CDS
T09193
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vsy
Vibrio syngnathi
Pathway
vsy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vsy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
K08M4_40380
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vsy03019
]
K08M4_40380
03009 Ribosome biogenesis [BR:
vsy03009
]
K08M4_40380
Enzymes [BR:
vsy01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
K08M4_40380
Messenger RNA biogenesis [BR:
vsy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
K08M4_40380
Ribosome biogenesis [BR:
vsy03009
]
Prokaryotic type
rRNA helicases
K08M4_40380
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
WSD
Motif
Other DBs
NCBI-ProteinID:
ARP40699
UniProt:
A0AA34XR00
LinkDB
All DBs
Position
2:complement(1207761..1209770)
Genome browser
AA seq
669 aa
AA seq
DB search
MSESVIQFNELALNDNILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAF
SLPLLNKINLNQHKPQAIIMAPTRELAIQVAAEIKNLGRDINGLKVLEIYGGASIVDQMR
ALSRGAHIVVGTPGRVKDLLTRDRLHLDEAHTFVLDEADEMLKMGFVDDVTWILEQAPET
AQRVLFSATMPPMVKTIVDRYLRNPARVDVAGTNHTVDKVAQNYWVVKGVEKDEAMSRLL
ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTKSQMEEIQLPKRDEVAAARVAKLGAELETEKESKALENFAGLISTLQESLEVDAAT
LAAMLLKRQQGKSPLFYVGEDPMIAAIERDKNRRKERREDRDNGRDGGGRNFNTQDWDTY
QLQVGREQGVQVKDIVGALANELGLTKGSIGAIKLDQGSTYVQLPKAMNSETAGKLSKLR
IRQKEAGAVVVDFNDFREPRRGGGGRDGNRGGRDGGRGGRDGGGYRGNREGGNREGGNRE
GGNGGRGGYRGNRDGARDGNSAGGRDGERRFDRNRGGDHRGNHRGERGHGNAAAGNGGNR
GRRPERSEG
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaatctgtaattcaatttaatgaattagcccttaacgataacattctttcagct
cttgatagcatgggtttcgtttctccgactccaatccaagcagcagctattcctcttctt
cttgaaggccgtgacgcactaggtaaagcacagactggtactggtaaaacagcagcattc
tctctgcctttacttaacaaaatcaacctgaaccaacacaaaccacaagcaatcatcatg
gctcctactcgtgagctagcgattcaagttgctgcggaaatcaaaaacttaggtcgtgac
atcaacggtcttaaagttcttgaaatctacggtggtgcttcaattgttgaccaaatgcgt
gctctaagccgcggtgctcacattgttgttggtactccaggtcgtgttaaagacttacta
actcgtgaccgtctacacctagatgaagcacatacatttgttcttgatgaagcagatgaa
atgctgaaaatgggctttgtagatgacgttacttggattcttgagcaagctccagaaact
gcacaacgcgtacttttctctgcaactatgcctccaatggttaagactattgttgaccgt
tacctacgtaacccggctagagttgacgttgctggtactaaccacacagttgacaaagta
gcgcagaattactgggtagttaaaggcgtagagaaagacgaagcaatgtctcgtcttctt
gaaactgaagaaactgacgcgtcaatcgtattcgtacgtactcgtcaagacactgagcgt
ctagctgactggctatctgcacgtggcttcaaagctgctgcactgcacggtgatattcct
cagtctctacgtgagcgcactgttgatcacatcaaacaaggtgttatcgatatcctagtt
gcaactgacgttgtagcacgtggtcttgatgttcctcgtattactcacgtattcaactac
gacatcccattcgatgttgaatcttacatccaccgtattggtcgtactggccgtgctgga
cgtaaaggtaaagcgatcctactagttcgcactaaccaaatccgtatgcttcgcactatc
gagcgtgtaactaagtctcaaatggaagaaatccaacttccaaaacgtgacgaagttgct
gctgcacgtgttgctaagcttggtgctgagcttgaaactgagaaagagagcaaagctcta
gaaaacttcgcaggtttaatctctacactacaagaatctctagaagttgatgctgctact
ctagctgcaatgcttcttaagcgtcagcaaggtaagagcccactattctacgttggcgaa
gacccaatgatcgcagctattgagcgtgataagaaccgtcgcaaagagcgtcgtgaagat
cgtgacaatggtcgtgacggtggtggtcgtaacttcaatactcaagattgggatacgtac
caactacaagttggccgtgagcaaggcgttcaggttaaagacatcgttggcgcactagca
aacgaactaggcctaactaaaggttctatcggtgctatcaagctagaccaaggttctact
tacgttcaactgccaaaagcaatgaactctgaaactgctggtaagctaagcaaacttcgc
attcgtcaaaaagaagctggcgctgtagttgttgatttcaacgacttccgtgagcctcgt
cgtggcggcggtggtcgtgatggcaaccgtggcggtcgtgatggcggtcgtggcggtcgt
gatggtggcggctaccgtggtaaccgtgaaggcggtaatcgcgaaggtggtaaccgtgaa
ggtggcaatggcggtcgtggtggctaccgtggcaaccgtgacggcgcacgtgatggtaac
tctgctggtggtcgtgatggcgagcgtcgcttcgaccgtaaccgtggtggcgatcaccgt
ggtaaccaccgtggcgaacgtggccatggcaacgcagcagctggcaatggcggcaaccgc
ggtcgtcgtccagagcgcagcgaaggttaa
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