Vibrio syngnathi: K08M4_40390
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Entry
K08M4_40390 CDS
T09193
Symbol
rnb
Name
(GenBank) Exoribonuclease 2
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vsy
Vibrio syngnathi
Brite
KEGG Orthology (KO) [BR:
vsy00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vsy03016
]
K08M4_40390 (rnb)
Enzymes [BR:
vsy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
K08M4_40390 (rnb)
Transfer RNA biogenesis [BR:
vsy03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
K08M4_40390 (rnb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
DUF7716
Motif
Other DBs
NCBI-ProteinID:
ARP40700
UniProt:
A0AA34TTD7
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All DBs
Position
2:1210164..1212170
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AA seq
668 aa
AA seq
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MFQDNPLLAQLKQQIQETLPKKEGTIKATEKGFGFLEVDNKTSFFIPPPYMKKCVHGDKV
IAIIRTEKDREVAEPEELIEQGLTRFIARVKLFKGRLNVVPDHPQLKKLQLKAKAKKGLN
PETLKEGDWVVAHIVQHPLKGDNGFLAEISEKITDADDKIAPWWVTLAQNDLPNSEPEGI
DDWQIKDDADLERIDMTHVPFVTIDGESTKDMDDALYAKKKENGDFELTIAIADPTAYIS
PDDAMDKVARERGFTIYLPGRNIPMLPRDLADNLCSLIENEVRPALCCTVTVSKDGVIGD
DINFFAANIKSHARLAYDNVSDWLETGSSKKWQPSEEIAAIVSDLHQFAQARSAWRSANA
VVFPDRPDYRFELSEDNDVVAIHADMRRSANKLVEESMISANICAGRVLKESFNQGVFNC
HSGFKAEKLADVLELVNPEAETPFTEEQIVSLEGFATLRRWLGSLDNSYYDNRIRKFQAY
SEISNEPAPHYAMGLDIYATWTSPIRKYGDMINHRMLKAHILGKAPIQTPDETIGDELAL
HRRHHGMAERNVGDWLYARTLANAPAEETRFQAEIFDINRAGMRVRLLDNGAAAFIPGSL
ILNNKERIECNGDMGTVSIDKEMVYKLGDVLEVVLFEVNQENRNLVAKPTQVFADLPSEP
ETTNETEV
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataatcctctactcgctcagctcaaacagcaaatccaagaaaccctccct
aaaaaggaagggacaatcaaagccactgaaaaaggatttggttttctcgaagtcgataac
aaaaccagcttctttattccgccgccatacatgaagaaatgtgtacacggtgacaaagtg
attgccatcattcgcaccgagaaagatcgcgaagtagcagagcctgaggaattgattgaa
caaggccttactcgttttattgcacgagtgaagttgtttaaaggtcgtttgaatgtagtt
cctgatcacccgcaactgaaaaagctgcaacttaaagcgaaagccaaaaaggggctaaac
cctgaaacgcttaaagaaggcgactgggttgttgctcatatcgttcaacacccgttaaaa
ggtgacaacggcttcttggctgagatctctgaaaaaattacagacgccgacgacaagatc
gctccttggtgggtgacgcttgcacaaaacgacctaccaaacagcgaacctgaaggcatc
gacgactggcagatcaaagacgacgctgatcttgaacgtatcgacatgactcacgtccct
tttgtgactatcgatggcgaaagcacaaaagatatggacgatgcgctttacgctaagaag
aaagagaacggtgattttgaactgactatcgcgattgctgaccctacggcttacatctct
ccagatgatgctatggataaagtagctcgcgagcgtggtttcactatttacttgcctggc
cgtaacattcctatgttacctcgcgacttggctgacaacttatgttcactaattgagaac
gaagttcgcccggcactttgctgcacagtaacggtatctaaagatggtgttatcggtgat
gacattaacttcttcgctgcaaacatcaaatctcacgctcgtcttgcttacgacaatgta
tctgactggctagagacaggttcatcaaagaaatggcaaccatcagaagagatcgctgca
attgtttctgaccttcaccaatttgctcaagcgcgttcagcgtggcgttcagcgaatgcg
gttgtattcccagatcgccctgactaccgctttgaacttagcgaagataacgatgttgtc
gctatccacgcggacatgcgtcgtagcgcaaacaagttggttgaagagtcgatgatcagc
gcgaacatctgtgcgggccgagtactaaaagaaagctttaaccaaggcgtctttaactgt
cactctggttttaaagctgagaaattagcagacgtcctggagctggttaacccagaagca
gaaacaccgtttacagaagagcagatcgtctctctggaaggattcgctacgctacgccgt
tggttaggttctttagacaacagctactacgacaaccgtattcgtaagttccaagcgtac
agcgagatcagcaatgaacctgcaccacactacgcgatgggactagacatttacgcgacg
tggacttcaccaattcgtaaatacggtgacatgattaaccaccgtatgcttaaagcacac
atcttaggtaaagcgccaattcaaacaccagacgagactattggtgatgaacttgccctg
caccgccgtcatcacggtatggctgagcgcaatgttggcgattggttgtacgctcgtact
ctcgcgaatgctccagctgaagaaactcgcttccaagcagagatcttcgacattaaccgt
gctggtatgcgcgtgcgtttacttgataatggtgcagcagcgtttatccctggctctctc
attcttaataataaagaaagaatagagtgcaacggtgatatgggcactgtatctatcgat
aaagaaatggtatacaaactgggagacgttttagaagtagttctcttcgaagttaatcag
gaaaaccgtaacttggtagcaaaacctacacaagtatttgcggacttgcctagcgagcct
gaaacaacaaatgaaaccgaagtttaa
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