Vibrio tapetis subsp. tapetis: A0348
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Entry
A0348 CDS
T05424
Name
(GenBank) putative YkuD super family protein
KO
K21470
L,D-transpeptidase YcbB
Organism
vta
Vibrio tapetis subsp. tapetis
Brite
KEGG Orthology (KO) [BR:
vta00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
vta01002
]
A0348
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
vta01011
]
A0348
Peptidases and inhibitors [BR:
vta01002
]
Cysteine peptidases
Family C82
A0348
Peptidoglycan biosynthesis and degradation proteins [BR:
vta01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
A0348
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
PG_binding_1
PG_binding_3
Motif
Other DBs
NCBI-ProteinID:
SON48327
UniProt:
A0A2N8Z8V8
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Position
A:373343..374956
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AA seq
537 aa
AA seq
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MKVRHLIVSIFLLCSSSVYAWSQHQSLAWVSSHTPAGTALAHHELLAQIYHGNQYQPIWY
QYDAIKQFEAQLEHAALADVSDVFYHRLSELKEARYQNRWQEYDILATDTLLTFMSYSQL
AQKEGKGWFFGGRVPAHLPMPEEGSTEALLFAVENDGLQAYLEQYEPNTAAFKKYVTTID
KLKPYVDFFVSDYMQRKHLLRKGDRITHKPELTYRLDILGFDVQHIDQSNKIYDGDLELV
VKQFQQRHGLSVDGVIGPKTIYWINRPMEERLRLVALNAQRLRIWPEQRSNIVLVNVPQF
AMTYWKEGQKAFESDVIVGRPSRKTPLINTKMDSVILNPRWNVPRKIMVKDILPKAIHSQ
EYLESHNYEIVKSWHNREVINPDEIDWTEVNPSSFPYRIRQLSGPRNALGQYKFNTPNKN
AIFLHDTPAKSLFSKDRRAFSSGCIRIEEAASFAQLLVEQSAVKSQFKQMSLPGEDTLAV
TLKRRIPVHIIYQTVWFKNGELQYSDDVYRYDHLSKSSNFDAKLTKIVNLDKVLSAQ
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atgaaagtaagacatttaattgtttcgatttttctgctctgctcgtcctccgtttatgcg
tggagccagcaccaatctctcgcctgggtatctagccatacacctgcaggcaccgcatta
gctcatcatgagttattggctcaaatttatcatggtaatcagtatcaacccatttggtat
caatacgatgcgatcaaacagtttgaagcgcaattggaacacgccgcgctggcggacgtc
agcgatgtgttttatcaccgactgtctgaactaaaagaagctcgttatcaaaatcgttgg
caagaatatgacattttggccaccgacaccttacttacctttatgtcttattcacaactg
gctcagaaagaaggcaaaggttggttctttggtgggcgtgtacctgcacatttgccaatg
cccgaagaaggcagtaccgaggcgttgctttttgcggtagaaaatgacggcctacaagcc
tacctagaacaatacgagcctaatacggccgcttttaaaaaatacgtgacgacgatcgat
aaactgaaaccgtacgtcgatttctttgtcagtgattacatgcagcgaaaacatttgtta
cgcaaaggagacagaataactcacaaaccggaattaacttatcgtttggatattctaggt
tttgatgttcagcacattgatcaaagtaataaaatttatgatggcgacttagaattggtg
gttaaacagttccaacaacgtcatggcttgagtgtggatggcgttatagggccgaaaact
atctattggattaatcgaccgatggaagagcgattacgtttagttgcacttaatgcacaa
cggctacgaatatggccagaacaacgcagtaatattgtattggttaatgtcccgcagttt
gcgatgacttattggaaagaagggcagaaagcgtttgaatccgatgtgattgttggtcga
ccatcacgcaagacgccactcatcaataccaaaatggactcggtgattctgaatcctaga
tggaacgtcccacgaaaaatcatggtcaaggacattttacctaaagcaatccatagtcag
gaatatctagaaagccacaattatgaaattgtaaaaagttggcacaatagagaagtcatc
aaccctgatgaaattgactggactgaggtcaaccctagctcgtttccatatcgaattcgt
caactgtcagggccaagaaatgcgttagggcaatacaaatttaacacgcccaacaaaaat
gctattttcttgcacgataccccggcaaaatctttgttttctaaagacagacgagcgttt
agctcgggttgtattcgcatagaagaggcggcgtcatttgctcaattattggtagaacag
tcagccgtaaaatctcagttcaaacaaatgtctttacccggtgaagacacattagcagta
acattaaaaagacgcattccagtgcatatcatctatcaaacggtttggtttaagaatggt
gaactgcaatacagcgatgatgtttaccgctatgaccatttgagtaagagttcaaatttt
gacgcaaaactgacgaaaatcgtgaatctagataaagttctttctgctcaataa
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