Vibrio tapetis subsp. tapetis: A2057
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Entry
A2057 CDS
T05424
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
vta
Vibrio tapetis subsp. tapetis
Brite
KEGG Orthology (KO) [BR:
vta00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vta03016
]
A2057 (rnd)
Enzymes [BR:
vta01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
A2057 (rnd)
Transfer RNA biogenesis [BR:
vta03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
A2057 (rnd)
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
ApbA_C
Motif
Other DBs
NCBI-ProteinID:
SON50036
UniProt:
A0A2N8ZDN8
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Position
A:complement(2169348..2170598)
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AA seq
416 aa
AA seq
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MEMCMSRIRGPYVRFCERDEAETPHPTRCLMFSAVPPFFNLEKPVNYQIIVNQTELERVC
QLAREVDTVMLDTEFVRTRTYFPQLGLIQLFDGENLSLIDPTEIDDMSAFTALLKDTAVV
KVLHACGEDLEVFAHSFGTMPTPMIDTQIMAAFLGHGLSTGFAALAKEYLDIELDKSEAR
TDWLARPLTEKQLEYAAADVFYLQPIYQKLEVAVQEAGWWEAVQQESDLVVSKRAVRHVP
DVAYIDVKGAWQLQPKQLATLQILAKWRVEEAIKRDLALNFVFREQDMLECARLNIKSLK
KMEQEGFDFREIRRHGNRVIAMVKEGELVPEEEWPQAIDRLMDLPGYKQLFKDLKDEVKR
AAQATGLATEFLASKKQLNQVFTWVWKKDRDPSTLPDTMQGWRLEVLGEKLIKHFD
NT seq
1251 nt
NT seq
+upstream
nt +downstream
nt
atggaaatgtgcatgagccgtatacgaggtccgtacgtacggttctgtgagagggatgag
gcggagacgcctcaccctactcgatgtcttatgtttagtgccgttccgcccttttttaac
ttagagaagccagtgaattatcaaatcattgtcaaccaaactgaattagaacgcgtttgt
caacttgccagagaagttgataccgttatgttggataccgaatttgttcgcacacgtacc
tattttccgcagcttgggctgatccaacttttcgatggcgaaaacttgtcattaattgat
ccgacagaaatcgacgatatgagtgcattcaccgcgttgctgaaagacacggcagtggta
aaggtgttacatgcctgtggtgaagacttagaagtgttcgcgcattcatttggaaccatg
ccaaccccgatgattgacacccaaatcatggcggcgtttttaggccatggtttgtcgaca
ggctttgctgccctagcgaaagagtatcttgatatcgagttggacaaaagcgaagctcga
acagactggttagcaagaccactgactgaaaagcaactcgaatacgcggccgccgatgtg
ttttatttgcagcctatttatcaaaagcttgaagtcgcagtgcaagaggctggctggtgg
gaagccgtgcagcaagaatctgatttagtcgttagtaagcgtgctgtacgtcatgtacca
gacgtcgcttacatcgatgtaaagggcgcttggcaattacagccaaagcagttagctacc
ctccaaattctagctaaatggcgtgtcgaagaagccattaagcgtgatttggcacttaac
tttgtgttccgtgaacaagatatgcttgaatgcgctcgtttaaacattaagagcttgaag
aaaatggagcaagagggctttgattttcgagaaattagacgccatggcaatcgagtgatc
gcgatggtaaaagaaggcgagttagtaccagaagaagagtggccgcaagccattgaccgt
ttaatggatcttcctggttataagcaattgtttaaagacctaaaagatgaagtaaagcgt
gctgcgcaagcaaccggcttagcaacagaattcttagcgtctaaaaagcagctcaatcaa
gtgtttacttgggtatggaagaaagaccgcgatccaagcactctaccagacaccatgcaa
ggttggcgtttggaagtcttaggcgagaagctaatcaagcactttgattaa
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