Vibrio tapetis subsp. tapetis: A3348
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Entry
A3348 CDS
T05424
Symbol
rhlB
Name
(GenBank) ATP-dependent RNA helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
vta
Vibrio tapetis subsp. tapetis
Pathway
vta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3348 (rhlB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vta03019
]
A3348 (rhlB)
Enzymes [BR:
vta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A3348 (rhlB)
Messenger RNA biogenesis [BR:
vta03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A3348 (rhlB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
SON51303
UniProt:
A0A2N8ZHB5
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All DBs
Position
A:complement(3507175..3508467)
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AA seq
430 aa
AA seq
DB search
MKKTHITEQKFADLEIHPQIIEGLDKKGFEFCTPIQALALPVLLTGQDIAGQAQTGTGKT
LAFLTATFNHLLTTPEHEGRKHNQPRAIIMAPTRELAIQIYNDAKPLVESTGVKAALAYG
GESYDKQLAALEQGVDILIGTTGRIIDFYKQKIFNLNNIQAVVLDEADRMFDLGFIKDIR
FLFRRMPEPKERLNMLFSATLSYRVQELAFEHMHNPEHVVVEPERKTGHRIQEELFYPSN
EHKMPLLQTLIEEEWPDRAIIFANTKHKCESVWGHLAADGHRVGLLTGDVPQKKRERILE
QFTQGMVDILVATDVAARGLHIPQVTHVFNFDLPDDCEDYVHRIGRTGRAGESGHSISFA
CEDYAINLTAIEEYIEHVVPVSDYDATALLEDLPAPLRMRPRNPQNRRTNTGGNKQGGNR
KRRPRAPRPQ
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagacgcatatcacagagcaaaagttcgccgatttggaaatacacccccaaatc
attgaaggattggacaaaaaagggtttgaattttgtacccctatccaagccttggcgttg
ccggtactgctcaccggccaagacattgcaggccaggcccaaacgggcactggtaaaacc
ttagcgtttctcactgctacttttaatcacctactgacaacaccggaacatgaaggccgc
aagcataaccagccgcgtgcaatcattatggctccgactcgcgaattagcgattcagatc
tataacgatgctaagcctttagtagaaagcactggtgttaaagcagcacttgcctacggt
ggcgaaagctacgataagcaacttgccgcactagagcaaggtgtggatatcctgatcggt
actactggccgtatcattgatttctacaagcaaaagatctttaacctaaacaacattcaa
gcagttgttctagatgaagccgatcgtatgtttgatcttggtttcattaaagatattcgc
ttcttgttccgccgtatgcctgaaccaaaagagcgtttgaacatgctgttctcagcaacg
ctttcttaccgtgttcaagagttggcattcgaacacatgcacaaccctgagcatgttgta
gtagagccagagcgtaaaacaggtcaccgtattcaagaagagttgttctacccttcaaat
gaacacaaaatgccgctacttcaaacgctaattgaagaagaatggccagatcgtgcaatc
atctttgctaacacaaaacacaaatgtgaatcagtttggggccacttggctgctgacgga
caccgtgttggtttgttaaccggtgatgtaccacaaaagaaacgtgaacgtattcttgag
caatttactcaaggtatggttgatatcttagtggcaacagatgttgcggctcgtggtcta
cacattcctcaagtgactcacgtatttaacttcgacctgcctgatgactgtgaagattac
gttcaccgtattggccgtactggtcgtgccggtgaaagtggccactcaatcagctttgct
tgtgaagactacgcaatcaacctaacggcgattgaagagtacatcgagcacgttgttccg
gtttcagactacgatgcaacagcattacttgaagacttacctgcgccattacgcatgcgt
cctcgtaatccacaaaatcgtcgtacaaacaccggtggcaacaagcaaggtggcaaccgc
aaacgtcgcccaagagcaccacgtccacaatag
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