Vibrio tapetis subsp. tapetis: B0088
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Entry
B0088 CDS
T05424
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vta
Vibrio tapetis subsp. tapetis
Pathway
vta03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vta00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
B0088 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vta03019
]
B0088 (deaD)
03009 Ribosome biogenesis [BR:
vta03009
]
B0088 (deaD)
Enzymes [BR:
vta01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
B0088 (deaD)
Messenger RNA biogenesis [BR:
vta03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
B0088 (deaD)
Ribosome biogenesis [BR:
vta03009
]
Prokaryotic type
rRNA helicases
B0088 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
WSD
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
SON51699
UniProt:
A0A2N8ZIG8
LinkDB
All DBs
Position
B:complement(71802..73748)
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AA seq
648 aa
AA seq
DB search
MSESVIQFNELALNENILSALDSMGFVSPTPIQAAAIPLLLEGRDALGKAQTGTGKTAAF
SLPLLNKIDLNQHKPQAIIMAPTRELAIQVAAEIKNLGRDVKGLKVLEIYGGASIVDQMR
ALSRGAHIVVGTPGRVKDLLTRERLHLDQAHTFVLDEADEMLKMGFVDDVTWILEKAPES
AQRVLFSATMPPMVKTIVDRYLRNPARVDVAGTNHTVDKVAQNYWVVKGVEKDEAMSRLL
ETEETDASIVFVRTRQDTERLADWLSARGFKAAALHGDIPQSIRERTVDNIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQIRMLRTI
ERVTKSQMEEIELPARDQVAEARLVKLGAELEADKEHKALESFVELIEKLQTNLEIDATT
LAAMLLKRQQGKRPLFYEGPDPMIEAIERDKKRRKERRDNPRDSRDGGRDGGRDGGRSYG
GNTADWATYQLQVGREQGVQVKDIVGALANELGLTKGSIGAIKLAQGHTFVQLPKTMNSE
VTGKLSKLRIRQKEVGAVVCDFDDFRESRGGRRDGGPRGGNRDGARQGHRGQRDGNREGG
GYRGNREGGRGSRDGGGNREGGERRFDRNRGGDHRGSHRGERSPRSEG
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgtccgaatctgtaattcaatttaatgaattagcccttaacgaaaacatcctttcagct
cttgatagcatgggtttcgtttcaccaactccaattcaagcagcagctattcctttgctt
ctagaaggcagagatgcgttaggtaaagcgcaaacaggtactggtaaaacagcagcgttt
tctcttcctctgctgaacaaaattgatctgaaccaacacaaacctcaagcaatcatcatg
gcgccaactcgtgagcttgctattcaagttgctgcagaaatcaaaaaccttggtcgtgac
gttaaaggccttaaagttttagaaatctacggtggtgcatctatcgttgatcaaatgcgc
gctctaagccgtggtgctcacattgttgttggtactcctggtcgtgttaaagatcttcta
actcgtgaacgcctacacctagaccaagctcatacgtttgttctagatgaagcagatgaa
atgcttaaaatgggttttgtagacgacgttacttggattcttgagaaagcgccagaatct
gcacaacgtgtattgttctctgcaactatgcctccaatggttaagactattgttgaccgt
tacctacgtaaccctgctcgcgttgacgttgctggtactaaccacactgttgataaagta
gcgcaaaactactgggtagtgaaaggcgtagaaaaagacgaagcaatgtctcgtctactt
gaaactgaagaaactgatgcatcaatcgtgttcgttcgtactcgtcaagatactgagcgc
ctagctgattggttatctgctcgtggctttaaagctgctgcactgcacggtgatattcct
cagtctatccgtgagcgtactgttgacaacatcaaacaaggtgttatcgacatcctagta
gcaactgatgttgttgcgcgtggtcttgatgttccacgaatcactcacgtatttaactac
gacatcccattcgatgttgagtcttacattcaccgtattggtcgtactggccgtgctgga
cgtaaaggtaaagcgattcttcttgttcgcactaaccaaatccgtatgctacgtactatc
gagcgtgttactaaatcacaaatggaagaaattgaacttccagcacgtgatcaagtagct
gaggcacgtctagttaaactaggtgctgagctagaagcagataaagaacacaaagcacta
gaaagttttgtagagcttatcgagaagcttcaaacgaacttagaaatcgatgcaactact
cttgctgcaatgcttcttaagcgtcaacaaggcaagcgtcctttgttctacgaaggtcca
gacccaatgatcgaagcaatcgagcgtgataagaagcgtcgtaaagagcgtcgtgataat
ccacgtgacagccgtgatggcggtcgtgatggcggtcgtgatggtggccgtagctacggt
ggcaacactgctgattgggctacttaccagctacaagttggtcgtgagcaaggcgtccaa
gttaaagacatcgttggcgctctagcgaacgagcttggcctaactaaaggttctattggt
gcaatcaaactggctcaaggccacacgtttgtacagcttccaaaaacaatgaactctgaa
gtaactggcaagctaagcaagctacgtattcgtcagaaagaagttggcgctgtagtatgt
gactttgatgacttccgcgaatctcgtggtggccgtcgtgacggtggccctcgtggcgga
aaccgtgacggtgctcgtcaaggccatcgtggtcaacgtgacggcaaccgtgaaggtggc
ggttaccgtggcaaccgtgaaggcggtcgtggttctcgcgatggcggcggtaatcgtgaa
ggcggcgagcgtcgtttcgatcgcaaccgtggtggtgatcaccgtggtagccatcgtggt
gagcgttctccacgtagcgaaggctaa
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