Vibrio tarriae: CEQ48_04445
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Entry
CEQ48_04445 CDS
T08683
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vti
Vibrio tarriae
Pathway
vti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CEQ48_04445
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vti03019
]
CEQ48_04445
03009 Ribosome biogenesis [BR:
vti03009
]
CEQ48_04445
Enzymes [BR:
vti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CEQ48_04445
Messenger RNA biogenesis [BR:
vti03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CEQ48_04445
Ribosome biogenesis [BR:
vti03009
]
Prokaryotic type
rRNA helicases
CEQ48_04445
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ASK54037
UniProt:
A0AAU8WCZ0
LinkDB
All DBs
Position
2:872601..874592
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AA seq
663 aa
AA seq
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MVGNGKARGTLVISSFSGIPMQDTAIQFSDLALNSAILSALNEMGFVSPTPIQAAAIPFL
LEGRDALGKAQTGTGKTAAFSLPLLNKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGKN
IKGLKVLEIYGGASILDQMRALKSGAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADE
MLKMGFVDDVTWIMEQAPESAQRVLFSATMPPMVKEIVERFLRDPECVDVAGSNQTVAKV
EQQYWVVKGVEKDEAMARLLETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDIP
QSLRERTVDHIKQGVIDILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAG
RKGKAILLVRTNQIRMLRTIERVTRSSMEEIQLPHRDKVAESRLTKLGQELAADKEFSSL
ERFADLVEKLQASLEIDATTLAAILLKRQQGKRPLFYVGADPMIEAMEREKSRRRERRDD
RRDSDRPARREFGAREQENHDWDTYQLQVGRDQGVQVKDIVGALANELGLTKGSIGAIKL
AQGHTFVQLPKAMSNDVSSKLRKLRIRQKEVGAVVCDFDDFRESRGGARREGGPRREGGR
RPEGNREGGFRGGREGGREGGRARSGEGRPFREGERRFERNRSGESSGSYRGERGHSRRR
EEA
NT seq
1992 nt
NT seq
+upstream
nt +downstream
nt
ttggttggaaatggtaaagcacgtgggaccttggttatttcttcatttagtgggatcccc
atgcaagatactgcaattcaattcagtgatttagcactgaacagcgccatcctttctgcc
ctaaacgaaatgggcttcgtatcaccaacacctatccaagcagcagcaattccttttttg
cttgaaggtcgtgatgcactgggtaaagcgcaaacaggtacaggtaaaacagcggcattc
tctttgcctctgctgaacaaacttaatctctctcagtacaagccacaagctattgttatg
gcgccaacgcgtgagctggcgattcaggtagcggctgagatcaaaaacctaggcaaaaat
atcaaaggcctcaaggttcttgagatctacggtggtgcatcgattcttgatcaaatgcgc
gctctgaaatctggcgctcacattgttgtgggtactccaggtcgcgtaaaagatctgatc
actcgtgatcgtctacacctagacgaatgtcatactttcatcttggatgaagcagacgaa
atgctgaaaatgggcttcgttgatgacgtgacttggatcatggagcaagcgccagagtct
gcacaacgcgtactgttctcggccaccatgccgccaatggtgaaagagatcgtggaacgt
ttcctacgtgatccagagtgtgttgacgtagcgggttctaaccaaacggtcgcgaaagtt
gagcaacaatactgggttgtaaaaggtgtagagaaagatgaagcgatggctcgtctgctt
gaaaccgaagaaaccgatgcttctatcgtgtttgtccgtactcgtcaggatactgagcgt
ctagcggattggttgtgcgcgcgtggctttaaagcggcggctctgcacggtgatatccct
cagtcgctacgtgagcgcaccgttgatcatatcaaacaaggtgtgattgatattctggtt
gcgaccgacgtcgtcgcacgtggtctggacgttcctcgtatcactcacgtatacaactac
gatattccatttgatgtggaatcttacatccaccgtatcggtcgtactggtcgtgctgga
cgtaaaggtaaggcgatcctgctggttcgtactaaccaaatccgcatgctacgcactatc
gagcgtgtcactcgttcttcaatggaagagatccaactgccacaccgcgataaagtggct
gaatctcgtctgactaagctgggtcaagaactggcagcagataaagagttcagctcgctc
gagcgtttcgctgatttggttgaaaaactgcaagcgtcactggaaatcgatgcaacgact
ctggctgcaatcctgctgaaacgtcagcaaggcaagcgtccactgttttatgtcggtgct
gatccaatgatcgaagcgatggagcgtgaaaaatcacgtcgtcgtgagcgtcgtgatgac
cgccgcgatagtgatcgtcctgctcgtcgtgaatttggtgcccgtgagcaagagaaccat
gattgggatacttaccaactgcaagttggccgtgaccaaggcgttcaagtaaaagacatc
gtcggcgctctcgcaaacgaactgggtctgactaaaggttctatcggtgcgatcaaactg
gcccaaggccatacgtttgttcagctaccaaaagccatgtcaaatgacgtttctagcaag
ctacgtaagctgcgtatccgccagaaagaagtgggcgcagtcgtgtgtgacttcgacgat
ttccgcgaatctcgtggtggtgctcgtcgtgaaggtggtccacgtcgcgaaggtggtcgt
cgcccagaaggcaaccgtgaaggcggtttccgtggtggtcgtgaaggcggccgcgaaggt
ggtcgcgcacgtagtggtgaaggccgtcctttccgtgaaggtgagcgtcgctttgagcgt
aaccgtagcggtgaaagcagtggtagctaccgtggtgagcgtggccatagccgtcgtcgc
gaagaagcgtaa
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