Vibrio tarriae: CEQ48_06025
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Entry
CEQ48_06025 CDS
T08683
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
vti
Vibrio tarriae
Pathway
vti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CEQ48_06025 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vti03019
]
CEQ48_06025 (rnr)
03016 Transfer RNA biogenesis [BR:
vti03016
]
CEQ48_06025 (rnr)
Enzymes [BR:
vti01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
CEQ48_06025 (rnr)
Messenger RNA biogenesis [BR:
vti03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CEQ48_06025 (rnr)
Transfer RNA biogenesis [BR:
vti03016
]
Prokaryotic type
tRNA degradation factors
CEQ48_06025 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
WHD_RNase_R
RNase_II_C_S1
Rho_RNA_bind
UPF0158
eIF-3_zeta
Motif
Other DBs
NCBI-ProteinID:
ASK54384
UniProt:
A0AAU8WD70
LinkDB
All DBs
Position
1:119867..122332
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AA seq
821 aa
AA seq
DB search
MSDTTHLDPFADREADNYDNPIPSREYILEFLTQANVPMNRNDLFEALKLEGEEQYEGLR
RRLRAMERDGQLVFTRRQCYALPEKLEMVKGYVIGHKDGHGWVRPEGSLNKEGDILLPHH
QMRTLIHGDFVLVQPSGTDKRGRKEGRLVRILEERNGQIVGRFFFEYGYSYVVPDDSRIH
HDILIPNDLRAGARMGNVVVIEITDRGTRNRGMMGKVVEVLGENMAPGMETQIAIRTHQI
PHEWPAEVEQQVAGLTEEVPEEAKQGRVDLRALPLVTIDGEDARDFDDAVYCEAKKGGGW
RLWVAIADVSYYVRPDTALDKEAINRGNSVYFPSQVVPMLPEVLSNGLCSLNPQVDRLCM
VCEMTVSETGKLSGYKHYEAVMNSHARLTYTKVHEILEGDEELRERYKALVPHLEELHKM
YQVLKSARDERGAIEFETVETKFIFNAQRKIESIEPVVRNDAHKLIEECMILANIASASL
VEKAKEAALYRVHEPPGEERLTGFRDFLGELGLDLSGGLEPSPTDYANLMKQIGERPDKE
LIQTMLLRSMKQAVYNANNAGHFGLALKRYAHFTSPIRRYPDLLLHRAIKYLIAKQEGRN
QDRWTPTGGYHYSFDDMDFYGEQCSMTERRADDATREVADWLKCEYMQDHVGEELEGVVA
NVTSFGFFVRLTELHIDGLVHISTLANDYYHYDPIGQRLVGESFGAIYRLGDAVKVKVLA
VNLDDRQIDFELVETSRKLRGQGKTAKKRAEEARAKAQGKKEAATKGGRGKAPVKLQAKP
QAEATRHPEGEGRAKPKKTKAPKKRKDQARKKTSKARDKTK
NT seq
2466 nt
NT seq
+upstream
nt +downstream
nt
atgtctgataccacacatcttgatcctttcgctgatcgcgaagccgacaattatgacaat
ccaattccgagtcgtgagtacattctcgaatttttaacccaagccaatgttcccatgaat
cgcaacgatctgttcgaagccctcaaactagaaggcgaagagcaatatgaagggttgcgt
cgtcgcctgcgggcaatggaacgagatggccaactggtgttcacgcgccgtcaatgctat
gccttgccagaaaagctggaaatggtgaaaggctatgtgattggccacaaagacggccac
ggctgggttcgtccagaaggaagcttaaacaaagaaggcgatattttattgccccaccac
cagatgcgtacgctgatccatggtgattttgtcttagtgcagccgagcggtactgataaa
cgtggccgtaaagaagggcgcttagtacgcattctcgaagagcgtaatggccaaattgtc
gggcgtttcttctttgaatacggctattcgtacgtggtgccggatgactcacgcattcac
catgacattctgatccccaatgacttacgtgctggcgctcgcatgggcaacgtggtcgtg
attgaaattaccgaccgtggcacgcgtaaccgcggcatgatgggtaaagtcgttgaagtg
ttgggtgaaaacatggccccgggtatggaaacgcaaattgcgattcgtactcaccaaatt
ccccatgaatggcccgcagaagttgagcagcaagtagcgggattgaccgaggaagtgcct
gaagaagccaagcaaggtcgtgtcgatctacgtgctttgccattagtcacgatcgatggc
gaggatgctcgagatttcgatgacgctgtctattgtgaagcgaaaaaaggcggtggctgg
cgtttatgggtcgcgattgccgacgtgagctattacgtacgtcccgataccgcgctggat
aaagaagcgatcaaccgcggtaactcggtctatttcccatcgcaagttgtcccaatgttg
ccggaagtgctgtcgaacggcctctgttcactcaacccacaagtggatcgcttgtgcatg
gtgtgtgaaatgaccgtatcggaaacgggtaagctctcgggctacaagcattacgaagcg
gtaatgaactcgcacgctcgcctgacttacaccaaagtgcatgaaatcctcgaaggagat
gaagaactgcgtgagcgttataaagcgctggttcctcatcttgaagagttgcacaaaatg
tatcaggtgctgaaaagtgcacgcgatgagcgtggcgcgattgagtttgaaaccgttgaa
accaaattcatcttcaatgctcagcgcaagattgaaagcattgagcctgttgtacgtaac
gatgcacataagctaattgaagagtgtatgatcctcgccaacatcgcctcagcctctttg
gtcgaaaaagccaaagaagcggcgttgtaccgtgtccatgagccaccaggtgaagagcgt
ctcactggcttccgtgatttcctcggtgaattggggctcgatctctccggtggccttgag
ccatcaccgaccgactacgccaatttaatgaagcaaattggtgaacgtccagataaagag
cttatccaaaccatgttgctgcgctcgatgaaacaagcggtgtataacgcgaataacgcg
ggtcactttggcttggcgttgaaacgttacgcacactttacgtcgccaatccgtcgttac
ccggatttgctgctgcatcgcgcgatcaagtatttgatcgcgaagcaagaagggcgcaac
caagaccgttggactccaaccggtggctatcactactccttcgatgacatggacttctac
ggtgagcagtgctccatgactgagcgccgcgctgatgatgccacacgcgaagtcgcagac
tggctcaaatgcgagtacatgcaagatcatgtgggtgaagaattagaaggcgtcgtcgcg
aacgtcaccagtttcggcttctttgtccgtctcactgagctgcatatcgacggtctggtg
cacatttccactctggccaacgattactaccattatgacccaattggtcaacgtctggtt
ggtgaaagctttggtgccatctaccgccttggcgatgcggtgaaagtaaaagtgctagcg
gtaaacttggacgatcgtcaaattgactttgaattggttgaaacaagtcgtaagctacgc
ggccaaggtaaaacggcgaagaaacgagccgaagaagccagagcgaaagcgcaaggtaaa
aaagaggctgcaaccaaaggcggccgcggtaaagcaccggtgaaattacaggctaaacca
caggcagaagcaacacgtcacccagagggtgaaggtcgggctaagccgaaaaagaccaaa
gcgccgaaaaaacgtaaagaccaagctcgtaagaaaaccagcaaagcacgagacaaaacc
aaatag
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