Vibrio tarriae: CEQ48_11845
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Entry
CEQ48_11845 CDS
T08683
Name
(GenBank) ATP-dependent RNA helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
vti
Vibrio tarriae
Brite
KEGG Orthology (KO) [BR:
vti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vti03019
]
CEQ48_11845
Enzymes [BR:
vti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CEQ48_11845
Messenger RNA biogenesis [BR:
vti03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
CEQ48_11845
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
HA2_C
Helicase_C
DEAD
AAA_19
HA2_N
AAA_22
T2SSE
ResIII
nSTAND3
NACHT
AAA_30
ABC_tran
SLFN-g3_helicase
RsgA_GTPase
AAA_23
Zeta_toxin
NTPase_1
TsaE
PhoH
LYTB
AAA_7
Motif
Other DBs
NCBI-ProteinID:
ASK55446
UniProt:
A0AAU8WV11
LinkDB
All DBs
Position
1:complement(1349370..1353293)
Genome browser
AA seq
1307 aa
AA seq
DB search
MTSSQPTPDSAAQPKANSAASLKKALGECLIKDRFRFSKRIDGASKIKNESARNAVFDEI
ALDIAQSMMVVEQRKQQMPKIEYPALLPVSQKRDDIAQAIAHHQVVIVAGETGSGKTTQL
PKICAELGRGKYGLIGHTQPRRLAARSVANRIAEEMETELGGFVGYKVRFTDQISDQTQI
KLMTDGILLAEIQNDRFLNQYDTIIIDEAHERSLNIDFILGYLKQLLPRRPDLKVIITSA
TIDPERFSKHFSNAPIIEVSGRTYPVEVRYRPLAGDDESDRDQLEGIFQAVDELCDEGLG
DILIFMNGEREIRDTADALSKRNLRDTEIVPLYARLSAGEQNKIFQPHAGRRIVLATNVA
ETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRTEEGICIRL
YSEEDFLSRPEFTDPEILRTNLASVILQMTALGLGDIEAFPFVEAPDKRNIQDGVRLLEE
LGAINDQIKDPKKRLTESGKQLARLPIDPRLARMVLEASKLGCLKEVMIIASALSIQDPR
ERPSDKQQASDEKHRRFNHEDSDFLTLVNLWHYIGEQQKALTSNQFRRQCKLDYLNYLRV
REWQDVYTQLHQSTREMGFKLNDEPGSYHAVHSAILVGLLSHIGMKDQEKNEYHGARNAR
FNIFPASGLFKKQPKWVMSAELVETSKLWARVVAKIEPDWIEPLAKHLIKRSYSEPHWSK
KNAAVMAYEKVMLYGIPIVPKRLVNYGNIDPVLSREIFIRSALVEGDWETKHAFFKQNRA
LLAEVEELEHKSRRRDILVDDEELFQFYDQRVGTEVVSGRHFDAWWKTASRKTPDLLSFE
KEMLFKGDASHITDLDYPNFWHQGNLKLKLSYQFEPGENSDGVTVHIPLPILNQVEPHGF
DWQIPGLRHELVVSLIKSLPKTLRKNFVPAPNYADAFLARATAFEMPLLDAMEKELRRMT
GVTVLREDWKLDQLPAHLKITYRAVDHRNRKLNESCDLHELKESLKEKVQETLSQVADDD
IEQRDLHTWSFGELPKVYQQKRGGFEVRAYPALVDKKDSVEIKLFETEQEQLGAMRAGQR
RLILLNVPSPIKYLHANLPNKSKLGLYFNPYGKVLDLIDDCIACGVDKLIEERGGMVWEP
QAFEALKEHVRAELGDTVVEIAKQVETILTTAYNINKRLKGKVDFTMAFALSDVKAQIEG
LIFSGFATECGWKRLPDILRYMRAIERRMEKLPVDPNKDRLHMLKIESVANKYKELLNKI
PKGMAIPDNVREIRWMLEELRVSYFAQQLGTPYPVSDKRVINAIEAC
NT seq
3924 nt
NT seq
+upstream
nt +downstream
nt
ttgacttcgtcacagcccacacccgattcggcagctcagccaaaagccaatagtgctgcc
agtttaaaaaaggcgctcggagagtgcctgatcaaagaccgttttcgttttagtaaacgc
attgatggtgccagcaaaatcaaaaatgaatcggcacgcaacgcggtatttgacgaaatc
gcgctcgatattgctcaatccatgatggtggtcgagcagcgtaaacagcagatgcccaaa
atcgagtatcctgcgctgctgccagttagccaaaaacgtgatgatattgcgcaggcgatt
gctcatcatcaagtggtgattgtggccggtgaaactggttcaggcaaaaccactcagcta
ccgaaaatttgtgcagaattaggccgtggtaaatacggtttgattggccacactcagccg
cgccgtcttgctgcgcgttcagtggcaaaccgcattgccgaagagatggaaaccgaactc
ggtggctttgttgggtataaagttcgctttaccgatcaaatctcggatcagactcaaatc
aaattgatgactgatggtatcttgctggcggagatccaaaacgatcgtttcctcaaccag
tacgacaccatcattattgatgaagcgcacgagcgcagtctcaacatcgactttatcttg
ggctatctcaagcagcttttgccgcgtcgtccggatctcaaagtcatcatcacctcggcg
accatcgatcctgagcgcttctcgaagcattttagcaatgcgccgatcatcgaagtctca
ggccgtacttatccggtggaagtgcgctatcgtccactggcgggggatgacgaaagcgat
cgcgaccaactggaaggcattttccaagctgtggatgagctgtgcgatgaagggttgggc
gatattctgatcttcatgaacggtgagcgcgaaattcgtgataccgcggatgcgctttca
aagcgcaacctgcgtgatacggaaattgtgccactgtatgcgcgtttgtcagccggtgag
cagaacaagattttccaacctcatgcgggtcgtcgcattgtgctggccaccaacgtggcg
gaaacctcgctaacggttccgggcatcaaatacgttatcgacccaggtaccgcgcggatc
agccgttacagctatcgcaccaaagtgcagcgtttgccgattgagccgatttcccaagcc
agcgctaaccagcgtaaaggccgctgtgggcgtaccgaagaggggatctgtatccgtctc
tattcggaagaggatttcttgtcacgccctgagtttactgaccctgagattctgcgcacc
aacttggcctcggttattttgcagatgacggcattggggctaggcgatattgaagccttc
ccctttgtggaagcgccagataagcgcaacattcaagatggtgtgcgtctgcttgaagag
ctgggtgctatcaacgatcaaatcaaagacccgaaaaaacgcctcaccgaaagtggtaag
cagctagcgcgtttgcccattgatccacgtttggctcgcatggtgctcgaagcgtcgaaa
ttaggctgtttgaaagaagtgatgattattgcttccgcgttgtcgattcaagatccgcgt
gaaagaccgagtgataagcagcaagcatcggatgagaaacatcgccgctttaaccatgaa
gattccgatttcctgacgttagtgaacctgtggcattacatcggcgagcagcaaaaagcg
ttgaccagtaaccagttccgccgtcagtgtaagcttgattacctcaactatttgcgtgtg
cgtgaatggcaggatgtgtacacccaactgcaccaatcgacccgtgaaatgggtttcaag
ctcaatgatgaaccgggcagttaccatgcggtgcacagtgcgattttggtcggtttgctg
tcgcacatcggtatgaaagatcaggaaaagaacgagtaccatggcgcacgtaacgcgcgt
ttcaacattttccctgcctctggtttatttaagaagcaaccgaagtgggtgatgtcggct
gagctggtggaaacctccaagctttgggcacgtgtagtcgcaaaaatcgaaccggattgg
attgagccactggcgaagcatctgatcaaacgcagctacagcgaaccgcattggtcgaag
aaaaatgcggcggtgatggcgtatgaaaaggtgatgctgtatggcatcccgattgtgccg
aaacgcttggtcaactacggcaatattgatcctgtgctcagccgcgaaattttcattcgc
agcgcgctggttgaaggggattgggaaaccaaacacgccttcttcaaacaaaaccgcgct
ctgctcgccgaagtagaagagttagaacacaaatcgcgtcgccgcgatattctggttgat
gacgaagaactgttccaattctacgaccaacgtgttggcaccgaagtggtgtctggtcgt
cattttgatgcgtggtggaaaaccgccagtcgtaaaacgccagatctgctcagctttgaa
aaagagatgctgttcaaaggcgatgccagccacattaccgatttggattacccgaacttc
tggcatcaaggcaatctgaaactcaaactcagttaccagtttgagccgggcgagaacagt
gacggtgtgacggtacacattccgctgccaatcttaaaccaagttgagccacatggcttt
gactggcagattcccggtttgcgccatgagttggtggtgagcttaattaaatcgctgccg
aaaacgctgcgtaaaaactttgtgccagcccccaattacgctgacgcttttttggcgcgt
gcaacagcatttgaaatgccgctgctcgatgcaatggaaaaagagctgcgccgcatgacg
ggtgtgacggtgctgcgtgaagattggaaactcgatcaactgcctgcgcatttaaaaatt
acttatcgcgcggtggatcatcgcaatcgcaagctcaatgaaagctgcgatctgcatgag
ctgaaagagagcttgaaagagaaagtgcaagagacactttcacaagtggctgatgatgat
atcgagcagcgcgatctgcatacgtggtcgtttggtgagctaccgaaagtgtaccagcaa
aagcgtggtggctttgaagtcagagcttatccggcgttagtcgataagaaagacagtgtt
gaaatcaaactgtttgagactgagcaagagcaacttggcgcaatgcgtgctggtcagcgt
cgtttgattttgcttaacgtcccttcaccaatcaaatatctgcacgccaatctgccgaac
aaatctaaacttggcttgtactttaacccgtatggcaaggtgctcgatttgattgatgac
tgcattgcctgcggcgttgataagctgattgaagagcgcggcggcatggtgtgggagcca
caagcatttgaagcgctcaaagagcatgtgcgtgccgagcttggcgatacggtagttgag
attgccaagcaggtagaaactattttgactacggcttacaacatcaataaacgtttgaaa
ggtaaggtggatttcacgatggcctttgcgctttcggatgtcaaagcacaaatcgaaggg
ctgattttcagcggctttgcgactgagtgtggttggaaacgtctgccggacattctgcgt
tacatgcgcgcgattgaacgccggatggaaaaactgccggtcgatcccaacaaagatcgt
ctgcatatgctgaaaattgaatcagtagccaacaagtataaagagctgctgaacaagatc
ccgaaagggatggcgattcccgataatgtgcgagaaatccgctggatgctcgaagagtta
cgcgtgagttattttgctcagcagttgggtacgccgtatccggtttcggataagcgggtc
atcaacgcgattgaggcttgttag
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