Candidatus Vallotiella hemipterorum: MYVALT_D_00070
Help
Entry
MYVALT_D_00070 CDS
T07343
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
vtr
Candidatus Vallotiella hemipterorum
Pathway
vtr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vtr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
MYVALT_D_00070 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vtr03021
]
MYVALT_D_00070 (rpoB)
03400 DNA repair and recombination proteins [BR:
vtr03400
]
MYVALT_D_00070 (rpoB)
Enzymes [BR:
vtr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
MYVALT_D_00070 (rpoB)
Transcription machinery [BR:
vtr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
MYVALT_D_00070 (rpoB)
DNA repair and recombination proteins [BR:
vtr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
MYVALT_D_00070 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_45
RNA_pol_Rpb2_7
RNA_pol_Rpb2_2
UbiD
PAAR_motif
SopD
Motif
Other DBs
NCBI-ProteinID:
CAG7603819
UniProt:
A0A916JUB3
LinkDB
All DBs
Position
1:complement(1072743..1076855)
Genome browser
AA seq
1370 aa
AA seq
DB search
MQYSFTEKKRIRKSFAKRPIVHPVPFLLATQLESFSAFLQADVPAAQRKPEGLQVAFTSV
FPIVSHNGFAQLKFVSYALSSPVFDVKECQQRGLTYCSALRAKVRLVIFDRESSTKPLVK
EVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSAR
IIPYRGSWLDFEFDPKDILYFRVDRRRKMPVTILLKAIGLTSEQILANFFVFDNFMLTNE
GAQMECVLDRLRGEVARFNIIDRDGKVIVQKDKRINAKHICDLQSTKTRYISVPDDYLIG
RVLAKNVIDTETGEVIANANEEMTEALLDKLRETRVQKIQTLYTNDLDQGPYISSTLHID
ETTDKAAARIAIYRMMRPGEPPTEDAVESLFNRLFYSEDTYDLSKVGRMKFNRRVGRDEI
HGPMTLTDDDLLAAIKILVGLRNGKGEADDIDHLGNRRVRCVGELAENQFRAGLVRVERA
VKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG
PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYCFLETPYRKV
INGQVTDKIDYLSAIEEGQYVIAQANAAIDDEGRLVDELVSAREAGETLMVIPDRIQYMD
VAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKAVVGTGIERRTAVDSGT
TVQACRGGVIDYVDASRVVIRVNDDEAVAGEVGVDIYNLIKYTRSNQNTNINQRPIAKVG
DRVACGDVIADGASTDLGELALGQNMLVAFTPWNGYNFEDSLLISERVVSDDRYTSIHIE
ELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIIYIGAEVETGDVLIGKVTPKGETQ
LTPEEKLLRAIFGEKASDVKDTSLRVPSGMTGTVIDVQVFTREGIQRDKRAQQIIDDELK
RYRLDLNDQLRIVESDAFERLARMLNGKLVNGGPKKLAKNSKITREYLNNLAHYHWFDIR
LSDENAAAQLEAIKESIEQKRDQFSLAFEEKRKKLTQGDELPPGVLKMAKVYLAVKRRLQ
PGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPCDVVLNPLGVPSRMNVGQILETHLGWSA
KGLGWRIGEMLQAKKSTLVQDLRLFLMKIYNESGRLESIDEMSNDEIIELAQNLKEGVPF
ATPVFDGAHEREISYMLDLAFPDEVAQQLGMTKSKNQVTLYDGRTGEAFERPVTVGYMHM
LKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLT
VKSDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN
NT seq
4113 nt
NT seq
+upstream
nt +downstream
nt
atgcaatattccttcaccgagaagaagcgcattcgcaagagttttgcgaaacgccctatc
gttcacccggttccttttctgctggctactcagcttgaatcatttagtgctttcttacag
gcggatgtacctgctgcacaacgtaaaccggaagggctgcaagttgcttttacatcagtt
tttccaatcgtctcgcataatggttttgcccagcttaagtttgtcagctatgcgctgtca
tctccggtgtttgacgttaaggagtgccaacagcgcggcttaacctattgctctgcattg
cgggctaaggttcgcctagtaatcttcgatagggaatcctcaactaagccgcttgttaaa
gaggtaaaagaacaagaagtatacatgggcgaaattccgcttatgacaccaaccggctcg
ttcgtaatcaacggtactgagcgtgtaatcgtttcacagctacaccgatcaccaggtgtg
ttctttgaacatgacaagggtaaaacgcatagctcaggtaagctattattctcggctcgt
attattccctatcgcggctcctggctagattttgagttcgatccgaaagatatcttatac
tttcgagttgatcgtcgccgtaaaatgccagtaacaatcctactaaaagctattggcttg
acgtcagagcagatcttggcgaatttcttcgtgttcgataactttatgttgaccaacgaa
ggcgcacagatggaatgtgttttggatcgattacgaggcgaggttgcacgttttaacatt
attgatcgagatggaaaggttattgtccaaaaagacaaacggattaatgctaagcatatc
tgtgatcttcagagcacaaaaacgaggtatatctcggtgccagatgactatttgattggc
cgcgttcttgcgaagaacgtgattgataccgagactggtgaggtaatagccaatgcaaac
gaggagatgaccgaggctctgcttgataagctcagagaaacacgtgtacaaaaaatccag
accttatatacaaacgatctagaccagggtccgtacatatcatctacgcttcatattgat
gaaactaccgataaggctgctgcgagaatcgcaatttaccggatgatgcggccgggcgag
ccacctacagaagatgcggttgagtcgttgtttaatcgtcttttttatagtgaggatacg
tacgatctatcgaaagttggtcgaatgaagtttaaccgtcgagtcggtcgtgatgagatt
catggtccgatgaccttgaccgatgatgatctacttgcggcaattaagattttagttggg
ctgcgcaacggtaaaggagaggccgatgatatcgaccatcttggtaatcgtcgtgtgcgt
tgcgtcggtgagttagctgaaaatcagtttcgcgctggtttagtgcgtgtagaacgcgca
gttaaagagcgccttggtcaggcggagagtgagaatttaatgccgcatgacctaattaat
tcaaaaccaatttcatcagcgattcgcgagttcttcggctcctcacagctatcgcagttt
atggatcaaactaatcctctatctgagattacgcataagcgacgcgtatcagcgctagga
ccaggaggattgacacgtgagcgtgctggatttgaggtgcgtgacgttcacccgacacac
tacggtcgtgtatgcccgatcgaaacgccggaaggtccaaatatcggtctaattaactca
ctcgcgctgtatgctcacttaaacgaatattgtttcctcgagacgccctaccggaaggtg
attaatggtcaggtaactgataagatagactatctgtctgcgatcgaggaaggtcagtat
gtaattgctcaagcaaatgcagcgattgacgacgaaggtcggctagtggacgagctagtt
tcggctcgcgaagctggtgaaacgctgatggttataccagaccgaatccagtatatggat
gtagcaccatcacagattgtgtctgtagctgcgtcactaattccgttcctcgaacacgat
gatgcaaaccgagcacttatgggctcaaacatgcagcgtcaggcggtgccttgcctgcgg
ccggaaaaagcagtagttggtacgggcatcgagcgtaggactgctgtagactcaggtacg
acggtgcaggcatgccgtggtggggtgattgactatgttgacgctagccgtgtggtaatt
cgcgtgaacgatgacgaggcggtagccggtgaggttggcgtcgatatctataatttaatt
aaatatacgcgctcaaatcaaaatacgaatattaaccagcggcccatcgcgaaggttgga
gatcgtgtcgcatgtggcgatgtaattgctgatggtgcatcaaccgatctaggagagctt
gcgctcggccagaatatgctagtcgcgtttacaccgtggaatggctacaactttgaggat
tcactcttaatttctgagcgcgttgtctccgatgaccgctatacctcgatccatatcgag
gaactcaatgttgtagcacgcgatacaaagcttggcccggaagaaattacgagagatatc
tctaatctagctgaagtgcagctaggtcgtctagatgaatcaggaattatttatatcggt
gctgaggtcgagactggcgatgtattaattggtaaggtaactccgaaaggcgagactcaa
ctaactccggaagaaaagctgctacgcgcaatcttcggcgagaaagcttctgatgtaaaa
gatacgtctctgcgcgtcccatcaggcatgaccggaacggtaatcgacgtacaagtattt
acacgtgaaggaatccagcgtgataaacgtgcacaacagattatcgatgatgaacttaaa
cgctatcgattagatttaaatgaccagttacgcatcgtcgaaagcgatgcattcgagcga
ttagctcgaatgctcaacggtaagcttgtgaacggtggtccaaaaaaacttgcaaaaaat
tcgaagattacgcgcgaatacttaaataatttagctcattatcactggttcgatattcgc
ctctccgacgagaacgcagcagcgcaactagaggcaattaaagaatcaatcgagcagaag
cgtgatcaatttagcctcgcgtttgaagaaaagcgaaagaaactaacacagggagatgaa
ttgcctccaggtgtgttaaaaatggctaaagtatacctggcagtcaagcggcgattgcaa
cctggcgataaaatggcgggccgacacggtaataaaggtgtcgtctcaaaaatcgttccg
attgaagatatgccatatatggctgatggccgcccatgcgatgttgtattaaatccactg
ggggtgccgtcgagaatgaatgtcggccagatccttgaaacccacttaggctggtctgca
aagggtttagggtggcgtataggtgaaatgttacaggctaaaaaatcgaccctagtccag
gatctgagattgtttttgatgaagatttataatgagtcgggtcgtttagagtcaattgat
gagatgtctaatgatgaaattatcgagcttgcacaaaacttaaaagaaggtgtgccattt
gcaacaccagtatttgatggcgcgcacgagagagagatttcgtatatgctggatttagcg
tttccagacgaggtggcccagcagctaggaatgacaaagtcgaaaaaccaggtgacacta
tacgatgggcgtactggcgaggctttcgagcgtccagtaacagtaggctacatgcatatg
ttaaagctccatcatttagtggatgataagatgcatgcgcgctcgaccggcccatattca
ctggtaacgcagcagccgttaggcggtaaggcacaatttggtggccaacgctttggggaa
atggaggtgtgggcgctagaggcatacggcgcatcctacgtgttacaggaaatgttaacg
gtaaagtcggatgacgtaacaggtcgcacgaaagtgtatgagaatcttgtcaagggtgat
cacgtgatcgatgcgggcatgccagagtcattcaacgtgctagtgaaagaaatacggtcg
ctcggtatcgatatcgacctagaccggaactaa
DBGET
integrated database retrieval system
