Candidatus Vallotiella hemipterorum: MYVALT_F_03860
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Entry
MYVALT_F_03860 CDS
T07343
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
vtr
Candidatus Vallotiella hemipterorum
Pathway
vtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MYVALT_F_03860 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vtr03021
]
MYVALT_F_03860 (rho)
03019 Messenger RNA biogenesis [BR:
vtr03019
]
MYVALT_F_03860 (rho)
Transcription machinery [BR:
vtr03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
MYVALT_F_03860 (rho)
Messenger RNA biogenesis [BR:
vtr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
MYVALT_F_03860 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
S1CSD-TOTE-2
ATPase_2
AAA_25
AAA_22
Motif
Other DBs
NCBI-ProteinID:
CAG7602897
UniProt:
A0A916NV49
LinkDB
All DBs
Position
1:958727..959989
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AA seq
420 aa
AA seq
DB search
MYLSELKSQHVSALIEMANGLEIENANRLRKQELMFAILKKRAKTGETIFGDGTLEVLPD
GFGFLRSPETSYLASTDDIYISPSQIRRFNLHTGDTIEGEVRTPKDGERYFALVKVDKVN
GHPPEASKHKIMFENLTPLHPNKPLSLERDMRGEENVTGRIIDMIAPIGKGQRGLLVASP
KSGKTVMLQHIAHAIKSNHPQVILFVLLIDERPEEVTEMQRSVAGEVIASTFDEPAARHV
QVAEMVIEKAKRLIEMKHDVVILLDSITRLARAYNTVVPASGKVLTGGVDANALQRPKRF
FGAARNVEEGGSLTIIGTALIETGSRMDDVIYEEFKGTGNMEVHLERRLGEKRVYPSINL
NKSGTRREELLIKPEILQKIWVLRKFIHDMDEIQAMEFLLDKLKQTKNNSEFFDMMRRGG
NT seq
1263 nt
NT seq
+upstream
nt +downstream
nt
atgtatttgtctgagctcaagtcgcaacacgtatccgctttgatcgaaatggctaatggt
ctagaaatcgaaaacgcgaatcgcctgcgcaaacaggagttaatgttcgcaattctaaag
aaacgcgccaagaccggtgaaacaattttcggcgacggaacgctggaagtactgcccgat
ggttttgggtttttacgctcgcccgagacatcatatctagcaagtaccgacgatatttat
attagcccgtcgcaaattcgccgtttcaacttacatactggcgacacaattgagggcgaa
gtgcgcacgccaaaagacggagagcgatatttcgcacttgtcaaagttgacaaagttaac
ggacatccgccagaggcgtcaaagcataaaattatgttcgaaaacctcacgccattacat
ccaaataagcccctatcgctcgagcgagacatgcgcggcgaggaaaacgttactggccgc
atcatcgatatgatcgcgccgattggaaaaggccaacgcggactcttagttgcgtcgccg
aaatcaggcaagaccgtcatgctgcagcacatcgcacatgcaattaagtcaaaccatcca
caggttatattatttgtactactaattgatgagcgcccggaagaggttactgagatgcaa
cgttcggtagctggcgaggtgattgcatctacatttgatgaaccggcagctcgtcacgtt
caggtagctgaaatggtaatcgagaaagcaaagcggctcatcgagatgaagcacgatgta
gtaatcctattagattctatcactcgccttgctcgtgcttataatactgttgtcccagcc
tcaggaaaagttctgactggaggtgtagatgccaacgcactgcaacgccccaagcgcttt
ttcggtgcagctcggaacgtcgaggaaggtggttcgctcacgattatcggtaccgcgctt
atagaaacaggcagtaggatggatgatgtaatttatgaggagtttaaaggcacaggtaac
atggaagtgcatttagagcggcgccttggggaaaagcgagtttatccatcgattaattta
aacaaatcaggtacacgtcgagaagaattacttatcaagccagaaattttacaaaaaatt
tgggtgctgcgtaaatttattcatgatatggatgaaatccaagccatggaattcttactc
gataaactaaaacagactaagaataactcggagttttttgacatgatgcgtcgtggcgga
taa
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