Candidatus Vallotiella hemipterorum: MYVALT_G_02660
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Entry
MYVALT_G_02660 CDS
T07343
Symbol
rne
Name
(GenBank) Ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
vtr
Candidatus Vallotiella hemipterorum
Pathway
vtr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vtr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
MYVALT_G_02660 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vtr03019
]
MYVALT_G_02660 (rne)
03009 Ribosome biogenesis [BR:
vtr03009
]
MYVALT_G_02660 (rne)
Enzymes [BR:
vtr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
MYVALT_G_02660 (rne)
Messenger RNA biogenesis [BR:
vtr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
MYVALT_G_02660 (rne)
Ribosome biogenesis [BR:
vtr03009
]
Prokaryotic type
rRNA processing factors
MYVALT_G_02660 (rne)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TMEM106_N
Motif
Other DBs
NCBI-ProteinID:
CAG7598431
UniProt:
A0A916NUL0
LinkDB
All DBs
Position
1:complement(326718..329960)
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AA seq
1080 aa
AA seq
DB search
MLSAQRAFLIKRGGVSLCSSGSNPDCNGGRIAALELLMKRMLFNATQQEELRVAIVDGQR
LIDIDIETAGREQRKGNIYKGVIARIEPSLEACFVNYGEDRHGFLPFKEVDRRYFKISAE
SRPIRIQDALYESQELIVQVEKEERGNKGAALTTFISLAGRYLVLMPNNPRGGGVSRRIE
GDDRKELRETMSQLESPDGMSMIARTAGIGRSVEELQWDLNYLLQLWRAIETTANGACAP
LLIYLESSLVIRAIRDCFQPDIGEILIDTQDIYDQARAFMEVVMPDNLGKVKRYHDDVPL
FSRFQIEHQIETAYSRILPLLSGGAVVIDHTEALVAIDVNSARATRGADIEETALRTNLE
ASDEVARQLRLRDLGGLIVIDFIDMESVKSQREVEQRFKDALKHDRARVQMGKISRFGLM
ELSRQRLRPALSESSHVTCPRCNGTGHIRDTESSALQVLRLIQEEAMKENTAAIYCQVPV
DVTAFLLNEKRQEINRIESRFKVNVLLIPNKHLETPHYKLERLRYHDARLEEPRASWRMA
EEAARKLEYETGYSKRDNDIKPKQEAAVKGITPEIRAPNATPHLIAEASRRTQISLLSIV
RGRIIRWLNKCLFNGRLFTTSTTQITSQDTAVQLIGERVSNAARQSTERNTSYRSGYQPS
SHTSATPYVTTPLDRVPHCEERSIQGGRVASNEQDVRDTQASHQEKQAETRMRVKQPVRI
EQIVRSARTEHAELADYAKHSNVCVNQRERGEQGTHQRSEPLPVEVLCDKQAAERSHQET
IKATSASPISEIGLVRDGEERRRRRRGRRSGRREYSEGRVNIADAPQEVIEEKESMTSVA
LTDDPVSTYQRIPGLVTAAEPTPGQSIKSINANPDGQCHLMLNTSDATQQQKAIAEQQLV
IKSARDLGASHHITNKVSWQEAPIHQSSTESTVVITTTTVDPIGLASAQCDESVLLRSDK
IAPVISNITGTSTHAVYTSTVPAQALSTQSDNTVPGRYGETCNREASVSNTVVDALSINS
LALILESAGLVWVNTDPDKLRLAQQATEPDQKLLRGSRKHKPLLIPPMELMQQVETQPGL
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
ctgctcagcgctcagcgtgcttttttgataaaaagaggcggcgtatcgctctgctcatct
ggatctaatccagactgtaatggggggcgcatagccgcactggagctgttaatgaaacgt
atgttgtttaatgcaacgcagcaggaagaattgcgcgtagcaatcgtcgatggtcaaaga
ctaatcgacatcgatatcgaaaccgccgggcgcgaacagcgtaaaggcaatatttataaa
ggagtaattgcacgaattgagccgtcgcttgaggcgtgcttcgtcaactacggcgaggat
cgccatggttttttgccatttaaagaggttgaccgacggtatttcaaaattagcgccgaa
agtcggcccatacgtatccaagacgcgctctatgaaagtcaggaactaatcgtccaggtt
gagaaggaggagcgtggtaataaaggcgccgcgttaaccacgttcatctcattggctggg
cgatatctagtactaatgcctaacaatccgcgtggtggtggcgtatcacgacgtatcgaa
ggcgacgaccgaaaagaattgcgcgaaactatgtcgcagctcgaatcaccggacggtatg
agtatgatcgcccgaacggccggcatcggtcgctccgttgaagagctgcagtgggacttg
aactacttattgcaattgtggcgtgctattgaaaccacggcaaacggcgcatgcgcacca
ctactcatctatcttgaatcaagcttagtgatccgcgcaattcgggattgctttcagcca
gatattggcgagattctaattgatacacaggatatatacgatcaggctcgcgcgtttatg
gaagtagtaatgccagacaatcttggtaaggtaaaacgttaccatgatgatgtgcctctg
ttctcgagatttcaaattgagcaccagattgagacagcatattcccgaatcttaccgctg
ctatcgggcggtgctgttgtgatcgatcacacagaggcgttagtggctattgacgtcaat
tcagctcgagctactaggggtgctgatatcgaagaaacggcgttgcgcacaaacttagag
gccagtgatgaagttgctcgccagttgcgattgcgtgacttaggcgggttaattgtaatc
gattttatcgacatggagtcggtcaaaagccagcgtgaagttgagcagcggtttaaagat
gcacttaaacatgaccgagcccgggttcaaatgggtaagatctctcgcttcggacttatg
gagctgtcgcgccagcgactgcgtccagctctgtccgagagcagccatgtaacttgtcca
cgctgcaacggcactggccacatccgtgataccgaatcgtcggcactgcaagtgcttcga
cttattcaagaagaggcgatgaaagagaataccgcggcaatttattgccaggtaccggtt
gatgtaacagcttttcttttaaatgaaaaacgccaggaaatcaataggattgaatcacgc
tttaaggttaacgtgttgctcattccaaataaacaccttgaaacaccgcactacaagctc
gaacggctacgctatcacgacgcgcgacttgaagaaccgcgtgcatcgtggcgtatggcc
gaagaggcagctcgcaagctagaatatgaaaccggttacagcaagcgcgacaatgacata
aagccaaagcaagaagctgccgtgaagggaattactcccgaaattcgcgcacctaacgcc
acacctcatttaatagcggaggcgtcacggcgtacacaaatctcactgttatcgatagta
agagggcggattattagatggcttaataagtgcctatttaatggaagactttttactact
agtactacccagattactagccaagatactgcagtgcaacttataggggaacgtgttagt
aacgcagctcgtcaaagcacagaacgcaacacgtcatatcggagcggctatcaacctagt
agccatacttcggcgacaccttacgttaccactccattagatcgtgttcctcattgtgag
gaacgcagtatacaaggtgggcgcgtagctagcaacgagcaggatgtacgtgatactcaa
gcctcgcaccaggaaaaacaagctgaaactcgtatgagagtaaagcaaccagtgcgtatt
gaacaaatagtgcgttctgctcgtacagagcacgctgaattggctgattatgctaagcat
agtaatgtatgtgttaatcaacgagaacgaggtgagcaaggtacgcatcagagatcagag
ccactgccggtcgaagtattatgtgacaagcaggcagctgaacggtctcatcaggaaacc
ataaaagcgacgagtgctagcccgatatcggaaatcggtctcgtacgtgatggcgaggaa
cgacggcggcgtcggcgtggacggcgtagcgggagacgtgaatatagcgaggggagagtc
aatatagcggacgctcctcaagaagtgatcgaagaaaaagaaagcatgactagcgttgca
ttaacagatgacccggtgtcgacttaccagcgcattccaggattagtgacggcagccgaa
cctaccccaggtcaatcgattaaatcgataaacgctaatccagatggtcaatgccattta
atgttgaatacatctgatgctactcagcaacaaaaagcgatcgcagaacaacagctggtt
atcaagtcagcgcgtgatctaggtgcgagccatcacatcactaataaagtttcctggcag
gaagcacccatccatcaatcatcgacggaatcaacggtagtaatcactaccactacggta
gatccgatcggattagcatcggcgcaatgcgatgagtcggttctgctgcgtagtgataaa
atagcaccagtaatctcaaatatcacaggcacgtcgactcatgctgtttatacctccact
gtgccggctcaggccctatcaacacaatcggataacacagtacccggtagatacggagag
acatgcaatagagaagcttctgttagcaatacagtggtagacgcactgtcaattaatagt
ctagctctaatcctggagtctgctggactagtatgggttaatacagatccggacaagctt
cgcttagcccagcaggctacggaaccggaccaaaagctgttgcgaggtagccgtaagcat
aagccattacttataccacccatggaattaatgcaacaagttgagacccaaccggggcta
taa
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