Vibrio tubiashii: IX91_01570
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Entry
IX91_01570 CDS
T03445
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
vtu
Vibrio tubiashii
Pathway
vtu02020
Two-component system
vtu02040
Flagellar assembly
vtu05111
Biofilm formation - Vibrio cholerae
Brite
KEGG Orthology (KO) [BR:
vtu00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
IX91_01570
09140 Cellular Processes
09145 Cellular community - prokaryotes
05111 Biofilm formation - Vibrio cholerae
IX91_01570
09142 Cell motility
02040 Flagellar assembly
IX91_01570
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vtu03021
]
IX91_01570
Transcription machinery [BR:
vtu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
IX91_01570
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_21
Motif
Other DBs
NCBI-ProteinID:
AIW12910
UniProt:
F9TCW2
LinkDB
All DBs
Position
1:complement(317389..318855)
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AA seq
488 aa
AA seq
DB search
MKPSLQLKLGQQLAMTPQLQQAIRLLQLSTLDLQQEIQEALDSNPLLEVEETSDEPSAEE
TNRNEEKEPTVELAETAEPDVKDSSELIEKSEISNDLEIDTTWEDVYSANTGSTGIALDD
DAPVYQGETTQSLQDYLIWQLDLTPFSETDRTIALALIDAIDDYGYLTVSTEDILESFNN
EEIEIEEIEAVRKRIQQFDPLGVASNNLQDCLLLQLATFPEDTPWLTEAKLVLTNHIDQL
GNRDYKLVIKETKLKEAELREVLKLIQQLDPRPGSRIAPDHAEYVIPDVSVFKDHGKWVV
TINPDSVPRLKVNQQYAALGKGNNADSQYIRSNLQEAKWLIKSLESRNETLLKVAKCIVE
HQRDFFEYGEEAMKPMVLNDVALAVDMHESTISRVTTQKYMHTPRGIFELKYFFSSHVST
DNGGECSSTAIRALIKKLVAAENSAKPLSDSKIAALLADQGIQVARRTIAKYRESLGIAP
SSQRKRLL
NT seq
1467 nt
NT seq
+upstream
nt +downstream
nt
atgaaaccctcattacaactcaagctaggacagcagttagcgatgacacctcaattgcag
caagcgattcgtttgttgcagctgtcgacgctagatcttcaacaagagattcaagaagct
ttggattcaaaccctctcctcgaggttgaagaaaccagtgatgagccgtctgctgaagaa
acaaaccgcaatgaagagaaagaacccacagttgagcttgcagaaacagcagagcctgat
gtaaaagacagctcagagctgatagaaaaatctgaaatcagcaacgacctcgaaattgat
accacttgggaagatgtctacagtgcaaacacgggtagtacaggcatcgctcttgatgat
gacgctcccgtctaccaaggtgaaaccactcaatctctgcaagactacctaatctggcaa
ttggacctcacgccatttagtgaaacggaccgtactatcgccttagcactgatcgatgcc
attgatgactatggttacttaaccgtctcaactgaggacatccttgaaagtttcaataac
gaagagattgagatcgaagagattgaagcggtacgtaaacgtatccaacaatttgatcca
ctcggcgttgcctctaataatctccaagactgtttgttactccagttagctaccttccca
gaagacacaccttggctaacagaagctaagttagtactgactaaccatattgatcagtta
ggtaaccgtgattacaaactggttataaaagagactaagctaaaagaagcagagctgcgt
gaagtgctcaagctaattcaacagcttgacccaagaccgggaagtcgcattgccccagac
catgctgaatatgtcattccagatgtgtccgtatttaaagaccacggaaaatgggtggtc
accatcaacccagattcagtaccaagacttaaggtcaaccagcaatatgccgcgctgggt
aaaggtaataatgcggatagccagtacattcgcagtaatctgcaagaagcaaaatggcta
attaaaagcttagaaagtagaaatgagacgttactcaaagttgctaagtgtattgttgaa
catcaacgcgatttctttgagtatggtgaagaagccatgaaaccaatggtgcttaatgat
gttgcgttagctgtcgacatgcatgagtccaccatttctagggttaccacgcagaaatac
atgcatacccctcgtggcatttttgaactgaagtacttcttttcaagccatgtcagcacc
gacaatggcggagagtgctcatcaactgcaatccgtgcactgattaagaaactcgtcgct
gcagagaacagtgcgaaaccactcagtgacagtaagattgcagctctactcgctgaccaa
gggattcaggtcgctcgtaggacaatagcgaaataccgagagtctttaggaatagcccct
tcaagtcagcgcaaacgcctgctttag
DBGET
integrated database retrieval system
