Vibrio tubiashii: IX91_09080
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Entry
IX91_09080 CDS
T03445
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
vtu
Vibrio tubiashii
Brite
KEGG Orthology (KO) [BR:
vtu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vtu03019
]
IX91_09080
Enzymes [BR:
vtu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
IX91_09080
Messenger RNA biogenesis [BR:
vtu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
IX91_09080
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_19
HA2_N
ResIII
AAA_22
T2SSE
nSTAND3
ABC_tran
NACHT
SLFN-g3_helicase
PhoH
AAA_30
TsaE
Zeta_toxin
Helicase_RecD
NTPase_1
OPA3
RsgA_GTPase
AAA_7
AAA_23
Motif
Other DBs
NCBI-ProteinID:
AIW14351
UniProt:
F9T1Q2
LinkDB
All DBs
Position
1:complement(1966213..1970049)
Genome browser
AA seq
1278 aa
AA seq
DB search
MLKDRFRLSKRISGANKIKKEASRNAVFDEIALDIAKSMMEAEQRTNYIPKIEYPEILPV
SQKKDDIAQAIEQNQVVIVAGETGSGKTTQLPKICAELGRGKFGLIGHTQPRRLAARSVA
NRIAEEMETKLGEYVGYKVRFNDQISENTQIKLMTDGILLAEIQHDRYLNQYDTIIIDEA
HERSLNIDFILGYLKELLPRRPDLKVIITSATIDPERFSKHFSNAPIIEVSGRTYPVETR
YRPLRGEDDVDRDQLDGIFEAVDELCDEGLGDILIFMNGEREIRDTADALAKRNLKSTEI
VPLYARLSAGEQNKIFQPHAGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKV
QRLPIEPVSQASANQRKGRCGRVEEGICIRLYSEDDYNSRPEFTDPEILRTNLASVILQM
TALGLGDIEAFPFVEAPDKRNIQDGVRLLEELGAINEKAKDPKKRLTSVGRQLAKLPIDP
RLARMVLEAPKYGALKELMIIASALSIQDPRERPSDKQQSSDDKHRRFFHEESDFLTFVN
LWDYIQKQQKKLSGNQFRKQCKQDYLNYLRVREWQDVYFQVHQAMREMDFKLNDEPASYQ
GVHSAILVGLLSHIGMKDAEKNEYQGARNARFHIFPASGLFKKQPKWIMSAELVETSKLW
GRVIAKIQPEWIEPLAKHLIKRSYSEPHWSKKRSAVMAHEKVMLYGVPIVPKRLVNYGSI
DQTVSREIFIRSALVEGEWETKHAFFKQNRKLLQEVEELEHKSRRRDILVDDDELFDFYD
QRVGTEVVSGKHFDTWWKKASRDNAELLNFEKEMLFKGDASHITDLDYPNFWHQSGLKLK
LSYQFEPGEDNDGVTVHLPLPILNQVEQAGFDWQIPGLRHELVVSLIKSLPKTIRKNFVP
APNYADAFLARATPMEAPLLDSLEKELRRMTGVEVLREDWNLEQVPDHLKVTFRAVDHRN
RKLKENRDLHELKESLKDKVQETLSKVADDDIEQQGLHTWSFGELPKVYQQKRGGYDVKA
YPAIVDTKDSVEIKLYETEHEQVSAMQAGQRRLILLNVPSPIKYLHSNLPNKSKLGLYFN
PYGKVLDLIDDCIACGVDKLIEEKGGLVWQPEQFEQLKEHVRAELGDTVVEIAQQVETIL
TTAFNINKKLKGKIDFTMAFALSDIKAQIESLIFKGFATECGWKRLPDILRYMKAIERRM
EKLPIDPNKDRLHMLKIESVTNDYKELLNKIPKGMVVPDNVKDVRWMIEELRVSYFAQQL
GTPYPVSDKRVKMAIDAC
NT seq
3837 nt
NT seq
+upstream
nt +downstream
nt
atgctgaaagatagatttcgtctaagcaaacgtatctccggggcaaataaaattaaaaaa
gaagcctcacgtaatgcggtgtttgacgagatcgcgcttgatattgccaaatctatgatg
gaagcagagcagcgcaccaattacatccctaagattgaataccctgaaattctgcctgtt
agccagaagaaggatgacattgcgcaagcgatcgagcaaaaccaagtggttatcgttgcg
ggtgaaacggggtcaggtaaaacgactcagttacctaagatctgtgcggagctaggtcgt
ggcaagtttggcttgattggtcatacacagcctcgtcgtttagcggcgcgttcggtggcg
aatcgaattgctgaagagatggaaaccaagcttggcgagtacgtcggctacaaggttcgt
tttaacgaccaaatctcagagaacactcaaattaaactgatgactgatggtatattgctg
gcagagatccaacacgatcgctatctcaatcaatatgacaccatcattatcgatgaagca
cacgaacgtagcttaaacatcgattttatcttggggtatttgaaagagcttttaccgcgt
cgtcctgatctaaaagtgatcatcacgtcagcaactatcgacccagagcgtttctcgaag
cattttagcaatgcaccgattattgaagtgtcggggcgtacttacccagtggaaacgcgt
tatcgcccactgcgcggtgaggacgatgtcgatcgcgaccaattagacggtatttttgaa
gcggttgatgagctatgcgatgaaggtctgggtgatatcctgatctttatgaacggtgag
cgtgaaattcgtgatactgcagatgcgttagctaaacgcaacctaaagagcacggaaatt
gtaccgctttacgcgcgattgtctgcgggtgagcagaacaagatattccaaccccatgcg
ggtcgccgaattgtattggcaaccaacgtggcagaaacctcgttaacggtaccgggtatc
aagtatgtcattgacccaggtacagctcgtatcagccgttacagttaccgaactaaggta
cagcgcctgccgattgaaccggtttctcaagcgagcgcaaaccagcgtaaaggtcgttgt
ggtcgtgttgaagaaggtatctgtatccgtctttactcggaagacgattacaactcccgc
cctgagtttaccgatccagagattctgcgtaccaacctagcgtcggtcattttgcagatg
actgcactcggtttaggcgatattgaagccttcccatttgttgaagcgccagataaacgc
aacatccaagacggtgtaagactgttagaagaacttggtgcgatcaacgaaaaagccaaa
gatccgaaaaaacgcctcacttcagtcggtcgtcaattagccaagctgccaattgacccg
cgcttagctcgtatggtgcttgaagcgccaaaatacggtgcactgaaagagctgatgatc
atcgcttctgccttgtctattcaagacccgcgcgagcgcccaagcgacaaacagcaatcg
tcggatgataagcatcgccgcttcttccatgaagagtctgactttctaacgtttgtaaac
ttgtgggattacattcagaaacagcagaaaaagctgtctggtaaccagttccgtaagcag
tgcaaacaagattacttgaactacttacgtgtgcgtgagtggcaggatgtttatttccaa
gttcatcaagcgatgcgagaaatggacttcaaactgaatgatgagccagctagctatcaa
ggggtacacagtgcgatccttgttggactgctgtcccacattggtatgaaagatgctgag
aagaatgaatatcaaggcgctcgcaatgctcgttttcatatcttccctgcttcaggcctt
ttcaagaagcagccgaaatggattatgtccgcagagctggtggaaacctcaaagctgtgg
ggtagagtcattgctaagattcaaccggagtggattgaacctttagccaaacacctgatc
aagcgtagctacagtgaaccacattggtcgaaaaagcgctctgcggtcatggcacacgag
aaagtgatgctttacggggtaccaattgtgcctaagcgtctggtgaactacggcagcata
gaccagaccgtaagccgagaaatctttatacgtagcgcgctagttgaaggtgaatgggaa
accaagcacgcgttcttcaagcaaaaccgtaagctattgcaagaagttgaagagcttgaa
cacaaatctcgccgccgtgacattcttgttgatgacgatgagttgtttgacttctacgat
cagcgtgtcggtacagaagttgtgtctggcaagcactttgatacatggtggaaaaaggca
tctcgcgataatgcggaactgcttaactttgaaaaagagatgctgtttaagggtgatgcg
agccatatcaccgacctcgattacccgaacttctggcatcagagcggacttaagctcaag
cttagctatcaatttgagccgggagaagataacgatggtgtgacagtgcatctcccgtta
ccgattttgaatcaggttgaacaagcaggatttgactggcagattccaggtttacgccat
gagttagtggtgagcctaatcaagtccttgccgaaaaccattcgtaagaactttgttcca
gcaccgaattacgcggatgcgtttttagcgcgtgcgacaccaatggaagcgccgctgctt
gattcgctagaaaaagagctgcgcagaatgacgggtgttgaagttctgcgtgaagactgg
aacttagagcaagtgccagaccacttgaaagtgactttccgtgccgttgatcatcgcaac
cggaaactgaaagaaaaccgtgatttgcatgagcttaaagagagcttaaaagacaaggtg
caagaaactttatctaaagtggcagatgacgacattgagcagcaagggctgcatacatgg
agcttcggcgagttgccaaaagtgtaccagcaaaaacgcggtggttacgatgtgaaagcc
tatccagccattgttgataccaaagatagcgttgagattaagctgtatgaaaccgagcac
gaacaggtttcagcgatgcaggcagggcaacgtagactgatcttgcttaacgtaccttcg
ccaattaagtatctgcattctaatttgccgaacaaatcgaaactcggtttgtactttaat
ccgtacggcaaagtgctagaccttatcgatgactgtatcgcttgtggtgttgacaagctg
attgaagagaagggcggattggtttggcagcctgaacaatttgaacagctcaaagagcat
gttcgcgctgaattaggtgatactgtggtagaaattgctcagcaagttgagacaattctg
acaacggcatttaacattaacaagaagttaaaaggtaaaattgactttacgatggcgttt
gctctgtctgatatcaaagcgcaaatcgaaagtttaattttcaaaggttttgcgactgaa
tgcggatggaagcgactgcctgatattttgcgttacatgaaggcgatcgagcgtcgtatg
gaaaaattacctatcgacccgaataaagatcgcttacacatgctcaagatagagtcagtc
actaatgattacaaagagttactgaacaaaattccaaaaggtatggttgtgcctgataac
gtcaaagacgtacgttggatgatagaagagctaagagtgagctactttgctcaacagctt
ggtacaccatacccagtatcggacaagcgtgtaaaaatggcgattgatgcttgttag
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integrated database retrieval system
