Vibrio tubiashii: IX91_10255
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Entry
IX91_10255 CDS
T03445
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
vtu
Vibrio tubiashii
Brite
KEGG Orthology (KO) [BR:
vtu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vtu03016
]
IX91_10255
Enzymes [BR:
vtu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
IX91_10255
Transfer RNA biogenesis [BR:
vtu03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
IX91_10255
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Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
RNAseD_HRDC_C
HRDC
Motif
Other DBs
NCBI-ProteinID:
AIW14581
UniProt:
A0A0A0SEF1
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All DBs
Position
1:complement(2230725..2231840)
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AA seq
371 aa
AA seq
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MNYQIITQTAQLDTVCQSARQADVVMLDTEFVRTRTYYPQLGLIQLFDGQNLSLIDPTVI
EDMAPFVELLKDTSVLKVLHACGEDLEVFHNSFECLPYPMVDTQLMAAFLGHGLSTGFAA
LVESYLGVELDKSESRTDWLARPLTDKQLEYAAADVYYLQPLYEQLFEKITQAGWWDAAQ
QESDLLASKRIKTVNLEMAYLDVKGAWQLKPKELSILKPLATWRLKEALRRDLALNFIFK
ENDLLTVARLGIQNHSQMEQEGMDYRSVQRHSARIISIVKSAKKTPVDEYPEKIERLMDM
PGYKQKFKVLKDEVKRVSQASGLATEFLASKKQLNQLMSWVWKKDRDPAKLPDVMQSWRL
ELFGEKLNKLL
NT seq
1116 nt
NT seq
+upstream
nt +downstream
nt
gtgaattatcagattattactcaaacggcgcagctcgataccgtttgtcaaagtgcacga
caagctgatgttgttatgttggatacagagtttgtccgtacccgtacatactatccacag
cttggccttatccagctctttgatggacagaacctttctcttatcgatccaacggtaata
gaagacatggctccgtttgttgagctgcttaaagatacgtctgtacttaaggtgcttcat
gcctgcggtgaagacttggaagtgttccataacagctttgagtgcttgccatatcctatg
gtcgacacccaacttatggctgctttccttggccatggtttatcgacaggttttgccgct
ttagtcgaaagctatttaggtgttgagctagataagagtgagtctcgtaccgattggttg
gcgcgcccactcacagacaaacagctagaatatgcagccgcagatgtttattacttacag
cctttgtatgagcagttatttgagaaaattactcaagctggctggtgggatgccgcgcag
caagagagtgatttactcgcttccaaacgcattaaaactgtcaacctagagatggcgtat
cttgatgtgaagggcgcttggcaacttaaaccaaaagagctttcaattcttaagcctttg
gctacatggcgtttgaaagaagcattgcgtcgagatctagcacttaactttatctttaaa
gaaaacgacctactcactgtggcgcgtctgggtattcaaaaccatagccagatggaacaa
gaagggatggattaccgctcggtacagcgtcacagcgcacgtattatctcaattgtaaaa
tcggccaagaagacacccgtcgacgagtatccagagaagattgaacgccttatggatatg
ccgggttacaaacagaaattcaaagtgttgaaagatgaagtaaaacgcgtttcgcaggct
agtggattagctactgagtttctagcctctaagaagcagcttaatcagctaatgagttgg
gtgtggaaaaaggacagagatcccgccaagctacctgatgtgatgcaaagctggcgatta
gagctgtttggtgaaaaactaaataagcttctctag
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