Vibrio tubiashii: IX91_11855
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Entry
IX91_11855 CDS
T03445
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
vtu
Vibrio tubiashii
Pathway
vtu03030
DNA replication
vtu03430
Mismatch repair
vtu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
vtu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
IX91_11855 (dnaE)
03430 Mismatch repair
IX91_11855 (dnaE)
03440 Homologous recombination
IX91_11855 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
vtu03032
]
IX91_11855 (dnaE)
03400 DNA repair and recombination proteins [BR:
vtu03400
]
IX91_11855 (dnaE)
Enzymes [BR:
vtu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
IX91_11855 (dnaE)
DNA replication proteins [BR:
vtu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
IX91_11855 (dnaE)
DNA repair and recombination proteins [BR:
vtu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
IX91_11855 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
tRNA_anti_2
Motif
Other DBs
NCBI-ProteinID:
AIW14867
UniProt:
F9T5L5
LinkDB
All DBs
Position
1:complement(2548065..2551544)
Genome browser
AA seq
1159 aa
AA seq
DB search
MSDPKFIHLRVHSDFSMVDGLSKVPPLVKKVAELGMPAMGLTDFTNLCGLVKFYGTAHGC
GIKPIIGADFVMQSPEFGDELTKLTVIAADNVGYKNLTLLISKAYLRGHVQHQPVIDKEW
LAELSEGVIILSGAKSGEIGKALLKGNQNVVEQCVEFYQTHFPDRFYLELVRTGRADEET
YLHFALELAEQHDLPVVATNDVVILDETLFDAHEIRVAIHDGYTLEDPRRPKNYSAQQYL
RTEEEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPAFPTEGMEETEFLVKKSEEGL
EERLEFLFPDPAVRAERRPEYDDRLKIELEVINNMGFPGYFLIVMEFIQWSKDNAIPVGP
GRGSGAGSLVAYALKITDLDPLEYDLLFERFLNPERVSMPDFDVDFCMDKRDQVIDHVAE
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHGFGFVDRISKLVPPDPGMTLEKAFKAEPA
LPELYENDEEIKELIDMCRILEGCTRNAGKHAGGVVISPTTITDFAPIYADAEGHFPVTQ
FDKNDVETAGLVKFDFLGLRTLTIIDWALGLINPRLEKEGKDPVAIESIPLEDQASFNLL
QNSETTAVFQLESRGMKELIKRLQPDCFEDIIALVALFRPGPLQSGMVDNFIDRKHGREA
VSYPDEQWQHESLKEILEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRATFEEGAVANGVDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKTHFPA
EFMAAVMTADMDNTEKVVGLVDECFRMKLKVLPPDINAGLYRFNVDEDGAIVYGIGAIKG
VGEGPIDAILEARNKDGHFKDLFDFCARIDLKKVNKRVIEKLIYAGALDRLGPHRAAMMA
SLNDAVKAASQHHQAEAFGQTDLFGVLTEAPEEVEHKYTKVEPWPEKVWLEGERDTLGLY
LTGHPINAYIKELGKYTSCRLKDATPTRRDQSVTVAGLVIAARVMTTKRGTRIGIMTLDD
RSGRMEVMLFSDALDRYAELLEKDKILVVSGQVSFDDFNGGLKMSAREVMDLGTAREKYA
RGLSVSIDQSQINDRFFERFSQILEPHRAGSVPVHVYYQRSDARARLTLGTEWRVTPSDA
LLDDLKQLLGKGQVELEFN
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atgtcagaccctaagtttatccaccttcgagttcatagtgacttttccatggtcgatggc
ctttcaaaagtgccacccttggttaagaaagtggccgagttgggcatgcctgcgatggga
ctgactgactttactaacttatgtggtctagtgaagttttatggcaccgcccacggttgt
ggtatcaagccgatcataggtgctgacttcgtgatgcaatcaccggagtttggtgatgag
ctgactaagctgaccgtgattgctgcggataacgtcggttataagaacctgactttactg
atctcaaaagcctacctacgaggccacgttcagcatcaaccagtgattgataaagagtgg
ctggctgagctttccgaaggggtaattatactttccggggctaagagtggtgaaataggc
aaagcgctgttgaaaggcaaccagaatgttgtcgagcagtgcgttgagttctatcaaact
cattttccagaccgtttctatcttgaattggttcgcactggcagagctgatgaagaaacc
tatcttcactttgcgttagagctggcagagcaacatgacctgccggttgttgccactaat
gatgtggtgattcttgatgagacactgtttgatgcgcatgagattcgtgttgcgattcat
gatggttacacgctagaagatcctcgtcgaccaaaaaactacagcgctcagcaatatctt
cgtactgaagaggagatgtgcgagctattctcagacatccctgaagcattagaaaatagt
gtagagattgctaagcgttgtaacgtgacagtccgcttgggtgaatacttcctgcccgcg
ttcccaaccgaagggatggaagaaaccgagttcttggttaaaaaatctgaagaaggtctg
gaagagcgactggaattcttattccccgatccggcggtgcgtgcagaaagacgacctgaa
tacgatgatcgtcttaaaattgaactggaagtaatcaataacatgggattcccaggttac
ttcttgatcgtaatggagttcatccagtggtcaaaagataacgccatccctgtaggccct
ggccgtggttcaggtgccggttctttggtggcttacgcgttaaaaatcactgacctcgat
ccactagagtacgatcttctgtttgagcgattccttaacccagaacgtgtttccatgccc
gatttcgatgtcgacttctgtatggataaacgtgaccaagtgattgatcacgttgcagaa
atgtatggtcgtgatgcggtatcgcagatcatcactttcggtactatggcagcgaaggcg
gtaattcgtgacgtaggccgtgtacttggtcatggttttggttttgttgatcgcatctcg
aaactggttccgccagatccgggcatgacgctagaaaaagcattcaaagcagaacctgct
ttacctgagctgtacgaaaacgacgaagaaattaaagagctgatcgatatgtgtcgcatc
cttgaagggtgtacacgtaacgcaggtaagcacgcgggtggtgttgtaatatcgccgacc
actatcactgactttgcgccgatttatgctgatgcggaaggtcacttcccggtgactcag
ttcgataaaaacgacgttgaaaccgcgggtctggttaagtttgacttcttgggcttgcgt
acgctgaccattattgactgggcgttgggcttgattaacccacgcctagagaaggaaggc
aaagacccagtcgccattgagtctatccctttggaagaccaagcttccttcaatctgctg
caaaattcagaaaccactgcggtattccagcttgaatcgcgtggtatgaaagagctgatc
aaacgccttcagccagactgttttgaagatattatcgcattggttgctctgttccgtccg
gggccgcttcaatcaggcatggtagataactttatcgaccgtaaacatggacgcgaggcg
gtttcttacccagatgagcagtggcagcacgagtcgctaaaagagattctagagccaacc
tacggcattatcctctatcaggagcaggtaatgcagatcgctcaggttctttcgggttat
acgcttggcggcgctgacatgctgcgtcgtgcgatgggtaagaaaaagccagaagagatg
gccaagcagcgtgcgacgtttgaagaaggcgcagtcgccaacggcgtagacggcgaattg
gcgatgaagatcttcgacttggtagaaaagttcgcaggttacggcttcaataaatcgcac
tcggctgcatacgcactggtttcttaccaaacgctgtggctcaaaactcacttcccagcg
gaatttatggctgcggtaatgaccgccgatatggataacactgagaaagtcgtcggtctg
gtcgatgagtgtttccgtatgaaactcaaagtgttgccgccagatatcaacgcaggtttg
tatcgctttaatgtcgatgaagatggggcgattgtgtacggtatcggtgctatcaaaggg
gtgggtgaaggtccaattgatgccattctcgaagcacgcaacaaagacggccactttaaa
gacctattcgatttctgtgctcgcatcgacctgaaaaaggttaataagcgagtcattgag
aaactcatttacgcaggcgcgttggatcgccttggtccgcatcgtgctgcaatgatggct
tcactgaacgatgcagttaaagcggcgagccaacatcaccaagcagaagcctttggtcaa
accgatttgtttggcgtgttgaccgaagcacctgaagaagttgagcacaaatacaccaaa
gttgaaccttggccagaaaaagtgtggctcgaaggtgagcgcgatactttaggtctttat
ttgaccgggcacccaataaatgcctacataaaggaacttggtaagtacaccagttgtcga
ttaaaagacgcaacaccaaccagacgtgatcaaagtgttactgtcgcaggcctggtaatc
gcggctcgtgtgatgacgactaagcgtggaacacgtattggtattatgacactggatgat
cgaagcgggcgtatggaggtgatgttattctccgatgcgttagatcgatatgcagaattg
ttagaaaaagataaaattttggttgtttctggacaggtcagctttgatgatttcaatggt
ggtcttaaaatgtccgcgcgcgaggttatggatctcgggactgctcgtgaaaaatatgca
cggggattatcagtttccatcgatcaatctcaaatcaatgaccgattttttgagcgtttt
agtcaaatactagagcctcatcgggcggggagcgttcctgtccatgtatactaccaacgc
tctgatgcacgagcgcgtttgacgttgggtacagaatggcgagtgacgccaagtgacgca
ttattagatgatttaaaacaactacttgggaaaggccaggtagaactcgaatttaactaa
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