Vibrio tubiashii: IX91_13485
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Entry
IX91_13485 CDS
T03445
Name
(GenBank) diguanylate phosphodiesterase
KO
K18765
RNase E specificity factor CsrD
Organism
vtu
Vibrio tubiashii
Brite
KEGG Orthology (KO) [BR:
vtu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vtu03019
]
IX91_13485
Messenger RNA biogenesis [BR:
vtu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
IX91_13485
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
Motif
Other DBs
NCBI-ProteinID:
AIW15158
UniProt:
F9TAJ9
LinkDB
All DBs
Position
1:complement(2898806..2900824)
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AA seq
672 aa
AA seq
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MRYTPTLKLSTRLVAFVTMIVISAMFILFLGGTLSFKRLGQEYLDQSLKGIVEVLDKEME
DPDAAYSLQRWMPKMLQASNIVEMELLSEFGVIYRFKDTSSKVDTALLYEAGYTLERNQG
YRIHFKAVPPYIGYGYSIQALWSITLAVAFIVFCLVRGLKWLKEQLHGSELLEERGRMIL
AGRVEEHSVGDDKEWPFTASQALDRLIEELQDARQERSRFDTFIRSQTFLDQLTGAANRV
LFDSKLEAALSEHGSRGGILILRVDDWEQIEEDHDKQVANDFLISVGEGLSNVIQRYPDV
ILSRYYSSDFAIFAPNLSSKEVSNVAAQCLKQLAKLAPPSPLESDNWVHIGVSMYREGES
QGRVLDEAETALKSAQLQRINTWSRFQKHVNQDEERGSVRWRTLLDVALQPDQLYIFSQP
CYLLDKRNEPSVEHFELFARINDPEKGVIKASRFNSAVESIGYEATLDKAVVKTIIRHIR
HSNDSNSYSINLHVIPFAERSFFKWFRDELLQLTSEQRARLSFEFAEARLVKHLDYIRPV
AKMITGLGSRVVVGQAGRSIVSTHYLKEFPVSYLKLHRSLIKRIDQRHENQLFVRSLLGA
CAGLKTQVIAVGVDNKQEHRTMLELGVHGIQGRFLAAEQQMLPKPKVVERKEPMQVKQNK
VQIGRRNRWRKA
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atgaggtatacccctaccttaaagctcagtactcgactggttgcttttgtaaccatgatc
gttattagtgcaatgtttatccttttcttaggtggcaccttatcgtttaaacgtcttggt
caagaatatctcgatcaatctcttaaaggcattgtggaagtgcttgataaagagatggaa
gatcctgatgccgcctactcgctgcaaagatggatgcctaaaatgcttcaagcgtctaac
attgttgagatggaactgctgtccgagtttggcgtgatttaccgttttaaagatacttcg
tcaaaagttgacaccgcattgctctacgaagctgggtatacgttggagcgcaatcaaggt
tatcggatacatttcaaagcggtaccaccctatatcggttatggctattcaatccaagct
ttgtggtctatcactctagcggttgcgtttatcgtattttgcttggtgagggggctcaaa
tggctgaaagagcagttacatggctccgagctactggaagagcgcgggaggatgattctc
gccggaagagtagaagagcattcggttggcgatgataaagagtggccatttaccgcaagt
caggcattagaccgacttattgaagagttgcaagatgctcgccaagagcgtagccgtttc
gatacctttattcgtagtcagacgtttcttgatcagctaaccggggcggcaaaccgagtg
ttgtttgatagcaagttagaagcggcactgtctgagcacggttctcgtggtggaatacta
attctgcgggtagatgattgggagcaaattgaagaagaccacgataaacaggtagcgaat
gatttcctcatcagtgtcggtgaagggttgagtaatgtgatacagcgttacccagatgtg
atcttgtcgcgttattacagctctgactttgcgattttcgcgccaaacctttcgagcaaa
gaagtctccaatgtggcagcccaatgtctcaaacaacttgctaagttagcacctccttcg
ccgttagaaagtgacaactgggtgcatattggtgtcagtatgtaccgcgaaggcgaaagc
caaggtcgggttcttgatgaagctgaaacagcattgaagagtgcccagttgcaacgaatc
aatacttggagtcgttttcaaaaacacgttaatcaggatgaagagcgcggcagtgttcgt
tggcgcacgctattggatgtcgcgctacaacctgatcaactctatatcttttcccagccc
tgctatttattagataaacgcaatgagccctccgtcgaacattttgaactgtttgcgcgt
attaatgatcccgaaaaaggggttataaaggcttctcgttttaactcagcggttgagtct
attggttatgaggcaacactagataaagctgtggtgaaaacaataattcgccatataaga
cattcaaatgattcaaacagttactctattaacctgcatgtgataccttttgccgaacgg
agtttctttaaatggtttcgtgatgagttgctgcaactgactagcgagcaaagagctagg
ctatcttttgaatttgctgaagctcgtttggttaaacatttagattatattcgcccggtg
gcaaaaatgattacaggcttaggcagtcgtgttgttgttggtcaagcaggtcgttctatt
gtgagtactcactacctaaaagagttccctgttagctacctgaagctacaccgaagttta
attaagagaatcgaccaacgtcatgaaaaccagttgttcgtgcgcagtttactcggggca
tgtgcgggactaaaaactcaggttatcgccgtaggtgtcgataataagcaagagcacaga
accatgcttgagcttggtgttcacggcattcaagggcgatttttggcggcggagcagcag
atgttgcctaagccaaaagtagttgagcgcaaagaacctatgcaggttaagcagaacaaa
gtacaaattggacgccgcaaccgttggcgcaaagcgtag
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