Vibrio tubiashii: IX91_13970
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Entry
IX91_13970 CDS
T03445
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
vtu
Vibrio tubiashii
Pathway
vtu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
vtu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
IX91_13970
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vtu03021
]
IX91_13970
03400 DNA repair and recombination proteins [BR:
vtu03400
]
IX91_13970
Enzymes [BR:
vtu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
IX91_13970
Transcription machinery [BR:
vtu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
IX91_13970
DNA repair and recombination proteins [BR:
vtu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
IX91_13970
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
RPOC_hybrid
Motif
Other DBs
NCBI-ProteinID:
AIW15244
UniProt:
F9TB77
LinkDB
All DBs
Position
1:complement(2991385..2995590)
Genome browser
AA seq
1401 aa
AA seq
DB search
MKDLLNFLKAQHKTEEFDAIKIGLSSPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL
PSRIGLLMDIPLRDIERVLYFEMYVVTEPGMTDLEKSQMLTEEEYLDRLEEWGDEFTAKM
GAEAIKDLLASMDLPAEIEEMREELQSTNSETKRKKITKRLKLVEAFVQSGNNPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAIVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTRDKINVKGEGMYLASPAEAEKAYRTK
TAELHARVKVRITETVKDEDGNSTTETKMVDTTIGRAMLWQIVPAGLPYSIVNQKLGKKQ
ISHLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIEEAEAE
VREIQEQYQSGLVTAGERYNKVIDIWASTNDRVAKLMMENLSSETVVNRDGEEEQQESFN
SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVVHEHDCGTHEGVDMMPHIEGGDVKVALSELAL
GRVVAEDVLKPGTEDVLIPRNTLIDEKWCQIMEENSVDRMKVRSVVTCDADFGCCAQCYG
RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKTTGTVKL
HNAKFVINKDKKLVITSRASELTIIDEFGRTKEKHKLPYGSLLSKGDNDAVEAGETVANW
EAHTMPIITEVAGRIQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAIKL
VDAQGNDVMIPGTEMPAHYFLPGKAIVNIEDGAEVGVGDTLSRIPQKSGGNKDITGGLPR
VADLFEARKPKEPAILAEHTGTVSFGKETKGKRRLVITREGGDAYEEMIPKHRQLNVFEG
EKVERGDVIADGPESPHDILRLRGIHAVTQYIANEVQEVYRLQGVKINDKHIETIVRQML
RKCTITHAGDSTEFLVGEQVEYANVKIANRQLEAEGKELVRFERELLGITKASLATESFI
SAASFQETTRVLTEAAVSGKRDELRGLKENVIVGRLIPAGTGFAYHQDRQAKRVEEQEGP
SAEQATDNLAALLNAGFSADE
NT seq
4206 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaactttctaaaagcgcagcataagaccgaagaatttgatgcaatc
aaaatcggtctatcttcaccggacatgatccgttcatggtctttcggtgaagttaaaaaa
cctgaaacgatcaactatcgtacgttcaagcctgagcgtgatggtctgttctgtgcgcgt
atttttggtccagtaaaagactacgaatgtctttgtggtaaatataagcgtctgaaacac
cgtggtgttatctgtgagaagtgtggcgttgaagttacacaaactaaagttcgtcgtgac
cgtatgggccacatcgagcttgcttcaccagttgctcacatctggttcctaaaatcactg
ccgtctcgtatcggtctactaatggatatccctctacgtgatatcgaacgtgttctttac
ttcgaaatgtacgtagtaactgaaccgggtatgactgatctagaaaaatctcagatgcta
actgaagaagagtatctggatcgcctagaagagtggggtgatgagttcacggctaagatg
ggtgcagaagcgatcaaagacctacttgcgtctatggatctgcctgctgaaatcgaagaa
atgcgtgaagagcttcagtctactaactcagagactaagcgtaagaagatcactaagcgt
ctgaagctagttgaagcgttcgttcaatctggtaacaacccagagtggatgatcctaact
gtgcttccggtacttccgccagatctacgtcctctagtaccactagatggcggtcgcttc
gcgacttctgatctgaacgatctataccgtcgcgtaatcaaccgtaacaaccgtttgaag
cgtctactagagcttgctgctccggacatcatcgtacgtaacgaaaagcgtatgctacaa
gagtctgttgatgcacttctagataacggtcgtcgcggtcgcgcgatcacgggttcgaac
aagcgtcctctgaaatctcttgctgatatgatcaagggtaagcaaggtcgtttccgtcag
aaccttctaggtaagcgtgtagactactctggccgttctgtaatcacagtaggtccatac
ctccgtctgcaccagtgtggtcttcctaagaagatggcacttgagctattcaaaccgttc
atctacagcaagctagagactcgtggtcttgcgacgacaatcaaagctgctaagaagatg
gtagagcgcgaagaagcgatcgtttgggatatcctagacgaagtaatccgcgaacaccca
gtactattgaaccgtgcacctacacttcaccgtctaggtatccaggcgttcgaaccagta
ctaatcgaaggtaaagcaattcagttacacccacttgtgtgtgcggcgtacaacgcggac
ttcgatggtgaccaaatggcggtacacgtgcctctaactctagaagcacagcttgaagct
cgtactctgatgatgtcgacaaacaacattctgtcgccagcgtcaggtgatccgatcatc
gtaccttcacaggacgttgtattgggtctttactacatgactcgtgacaagatcaacgtg
aaaggcgaaggtatgtaccttgctagcccagctgaggctgagaaggcataccgtactaag
actgctgagctacacgctcgcgttaaagttcgtatcactgagactgttaaagacgaagat
ggcaacagcacaactgagactaagatggttgatacaactatcggtcgtgcaatgctatgg
caaatcgtgccagcaggtcttccatacagcatcgttaaccaaaagctaggtaagaagcag
atctctcacctacttaacgaggcttaccgtaagctaggtctaaaagacactgtaatcttc
gctgaccaaatcatgtacacaggtttcgcttacgcggcactttctggtgtatctgttggt
atcgacgacatggttgttccagcagctaagtacactgagatcgaagaagcggaagcagaa
gttcgcgaaatccaagagcagtaccaatctggtcttgtaactgcgggtgagcgctacaac
aaagtgatcgatatttgggcatcgaccaacgatcgcgtagctaagttgatgatggaaaac
ctatcttctgaaactgttgttaaccgcgacggtgaagaagagcagcaagaatcattcaac
agcatctacatgatggccgactcgggcgcacgtggttctgcagctcagattcgtcagctt
gcaggtatgcgtggtctgatggcgcgtccagatggttcgatcatcgaaacgccgatcact
gcgaactttaaagaaggtctaaacgtacttcagtactttatctcaacgcacggtgctcgt
aagggtcttgcggatacagcactgaaaacagcgaactcgggttacctaactcgtcgtcta
gtagacgttgctcaagacgttgttgtacacgagcatgactgtggcacccatgaaggtgtt
gacatgatgccgcacatcgaaggtggtgacgttaaagttgcactttctgagctggctctt
ggtcgtgtagttgcagaagacgtactgaagccaggtactgaagatgtactgatcccacgt
aacactctaattgatgagaagtggtgtcagatcatggaagagaactcagttgaccgcatg
aaagtgcgctctgtagttacctgtgatgcagacttcggttgttgtgctcagtgttacggt
cgtgacctagcacgtggtcacctagtgaaccaaggtgaagcagtgggcgttatcgctgct
cagtctatcggtgagccgggtacacagcttacgatgcgtacgttccacatcggtggtgcg
gcatctactgcagcagcagagaacagcatccaagctaagacgactggtacagttaagcta
cacaacgctaaattcgttatcaacaaagataagaagcttgtaatcacttctcgtgcttca
gagctgactatcatcgacgaatttggtcgtactaaagagaaacacaaactaccttacggt
tctctactatctaaaggcgacaacgacgcagttgaagctggtgaaacagtagcgaactgg
gaagcgcacactatgccaatcatcactgaagtggcaggtcgcatccagtttgtggacatg
atcgatggcgttacagtttctcgtcaaacagatgacctaacaggtctatcttcaagcgaa
gtaactgaagcagcagctcgcccagcagcaggtaaagatatgcgtccagctatcaaactt
gttgatgcgcaaggtaacgacgtaatgatccctggtactgaaatgccagctcactacttc
ctacctggtaaagcgattgtaaacatcgaagacggcgctgaagtaggcgtgggtgatact
ctatctcgtatccctcagaaatctggcggtaacaaagatatcaccggtggtctaccacgc
gtagctgacctattcgaagctcgtaagccgaaagagcctgcgattcttgctgagcacaca
ggtactgtaagcttcggtaaagaaacgaaaggtaagcgtcgtctagtaatcactcgtgaa
ggcggtgacgcttacgaagagatgattcctaagcatcgtcagcttaacgtattcgaaggc
gagaaagttgaacgtggtgacgtgatcgcagatggtccagagtctccacatgacattcta
cgtctacgtggtatccacgctgtgactcaatacatcgcgaacgaagttcaagaagtatac
cgtctacaaggcgttaagattaacgataagcacatcgaaactatcgttcgtcagatgcta
cgtaagtgtacaatcacgcacgctggtgactctacagagttcctagtgggtgagcaggtt
gaatacgcgaacgttaagattgctaaccgtcagctagaagctgaaggcaaagagctagtt
cgtttcgagcgtgagctacttggtattactaaggcatctctagcgactgaatcgttcatc
tctgcggcatcattccaggaaacaactcgcgtactaacagaagctgcggtttctggtaag
cgtgatgagctacgtggtctgaaagaaaacgtaattgttggtcgtctaatcccagcaggt
acaggtttcgcttaccaccaagatcgtcaagctaagcgtgtagaagagcaagaaggtcct
tcagctgaacaagcgactgacaaccttgcagcgctactaaacgcaggtttctctgcagac
gagtaa
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integrated database retrieval system
