Vibrio tubiashii: IX91_21870
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Entry
IX91_21870 CDS
T03445
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
vtu
Vibrio tubiashii
Brite
KEGG Orthology (KO) [BR:
vtu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
vtu03016
]
IX91_21870
Enzymes [BR:
vtu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
IX91_21870
Transfer RNA biogenesis [BR:
vtu03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
IX91_21870
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
OB_RNB
S1
CSD2
S1CSD-TOTE-2
Rho_RNA_bind
Motif
Other DBs
NCBI-ProteinID:
AIW16731
UniProt:
F9T4Z7
LinkDB
All DBs
Position
2:complement(1382115..1384118)
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AA seq
667 aa
AA seq
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MFQDNPLLAQLKQQIQETLPKKEGTIKATEKGFGFLEVDSKTSFFIPPPYMKKCMHGDKV
KAIIRTEKDREQAEPEELLEQGLNRFIGRVKLFKGKLNVTPDHPQLKKLSLKAKTRKGIK
SDDLKEGDWVIAHLIRHPLKGDNGFFVEISDKITDADDKIAPWWVTLAQNDLPNSEPAGL
DSWELKDDADLERTDMTHIPFVTIDGESTKDMDDALHAKKTESGDFELTIAIADPTAYIT
PDSDMDKVARERGFTIYLPGRNIPMLPRDLADDLCSLIEGEARPALCCSVTVTKEGVIGD
DIKFFAANIKSHARLAYDHVSDWIENGSSDAWQPSEEIAEVVRDLYDFSRARAEWRETHA
VVFPDRPDYRFELSEDNDVVAIHADMRRSANRLVEEAMITANICAGKTLQSSFNSGVFNT
HAGFKPEKIEDVINLVNPEGELPFTAESIATLEGFAALRRWLGSQETSYLDNRIRKAQAY
SEIGNQPLPHYAMGLDLYATWTSPIRKYGDMINHRMLKAHILGKEPVQTADDSVGEELAI
HRKHHKMAERNVGDWLYARTLADEPAKETKFNGEIFDINRAGMRIRLIENGAAAFIPGSL
ILANKERLECNGENGTVSIDKQVTYRLGDVLEVVLTDVNQENRSLVAKPTQIFEEVKTTT
EAETSAE
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaagataaccctctactggctcaacttaagcagcaaatccaagaaaccctgcct
aaaaaagaaggcacaatcaaagcgacagagaaaggctttggtttccttgaagtggatagt
aagacaagtttctttatcccacctccgtacatgaaaaaatgtatgcacggcgacaaggta
aaagcgatcattcgtacagagaaagatcgcgagcaagctgaaccagaagagctacttgaa
caagggcttaaccgttttattggccgagttaaactattcaaaggcaaactgaacgttacg
ccagaccatcctcaacttaaaaagttatctttaaaagctaagacacgtaaaggcatcaag
agtgatgatcttaaagagggtgattgggtgattgcacaccttattcgtcatccacttaaa
ggtgataatggcttctttgtcgaaatcagcgacaaaattactgatgcagacgacaagata
gcaccttggtgggtaaccttggcgcaaaatgatttgccaaacagcgaaccagcaggacta
gatagctgggagctaaaagacgacgctgatcttgaacgcaccgatatgacacacattccg
tttgtgaccattgatggtgagtcaaccaaagatatggatgacgcgctgcatgctaaaaag
acagaatctggtgatttcgaactgacaattgcgattgccgatcctacggcctacatcaca
cctgatagtgatatggacaaagtggcgcgcgagcgtggttttaccatctatctaccgggt
agaaatattccaatgcttccacgtgacctcgccgatgacttatgttcattgattgagggt
gaagcacgccctgctctatgttgtagtgtgacggtgacgaaagagggtgttatcggtgat
gacattaagttcttcgctgccaacattaaatctcatgctcgcttggcttacgaccatgtt
tccgattggattgaaaatggcagttcagatgcttggcaaccaagtgaagaaatcgctgag
gtcgttcgtgacctctatgacttctcacgtgctcgcgctgagtggcgtgaaactcatgcg
gtcgttttccctgaccgtccagactaccgatttgaactgagtgaagataacgatgttgtc
gctattcatgcagacatgcgtcgtagcgctaaccgcctagtagaagaggcgatgattaca
gcaaacatttgtgcaggcaaaacgctgcaatcaagctttaattccggtgtgtttaacact
cacgcgggcttcaaaccggaaaagattgaagatgtcattaatctggtaaacccagaaggt
gaactgccgtttaccgctgaatctatcgcgactctagaagggtttgcggcgctgcgtcgt
tggttgggtagtcaagaaacgtcttacctagataaccgaatccgcaaagctcaagcatac
agcgaaatcggtaaccagcctctaccgcattatgctatgggtcttgacctatacgcgacg
tggacatcaccaatccgcaaatatggcgatatgatcaaccaccgtatgcttaaagcgcac
atcttaggcaaagaaccagtgcagactgccgacgatagtgtcggtgaagaactagcgatt
catcgcaagcaccacaagatggctgagcgcaatgttggtgattggctatatgcacgtacc
cttgcagacgaacctgctaaagagaccaagttcaacggtgagatattcgatatcaaccgt
gctggcatgcgtattcgcttgattgaaaatggcgctgcggcatttattccaggctccctc
atcttagctaacaaagagcgccttgagtgcaacggtgaaaatggtacggtttcaatcgat
aaacaagtgacttaccgcttaggcgatgtgctagaggtggttctgactgacgtaaatcag
gaaaaccgcagtctagtcgccaaaccgacacaaatctttgaagaagtgaagacaacgaca
gaagctgaaacctcagcagagtaa
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