Vibrio tubiashii: IX91_21880
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Entry
IX91_21880 CDS
T03445
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
vtu
Vibrio tubiashii
Pathway
vtu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vtu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
IX91_21880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vtu03019
]
IX91_21880
03009 Ribosome biogenesis [BR:
vtu03009
]
IX91_21880
Enzymes [BR:
vtu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
IX91_21880
Messenger RNA biogenesis [BR:
vtu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
IX91_21880
Ribosome biogenesis [BR:
vtu03009
]
Prokaryotic type
rRNA helicases
IX91_21880
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Cas3-like_C_2
WSD
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AIW16733
UniProt:
F9T4Z6
LinkDB
All DBs
Position
2:1384583..1386529
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AA seq
648 aa
AA seq
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MTDSVIQFSDLALNDSILSALDGMGFVSPTPIQAAAIPHLLAGKDALGKAQTGTGKTAAF
SLPLLNKLDLAQRKPQAIVLAPTRELAIQVAAEVKNLGQNIAGLKVLEIYGGASIVDQMR
ALKNGAHIVVGTPGRVQDLINRDRLHLDEVHTFVLDEADEMLNMGFVDDVTEIMEHAPES
AQRVLFSATMPPMLKSIVERFLRDPETVDVAGKNHTVDKVEQQFWVVKGVEKDEAMSRLL
ETEETDASIVFVRTRQDTERLADWLCARGFKASALHGDIPQSLRERTVDHIKQGVIDILV
ATDVVARGLDVPRITHVFNYDIPFDVESYIHRIGRTGRAGRKGKAILLVRTNQLRMLRTI
ERVTKSSMEEIQLPHRDKVAEARVAKLGAELEADKEHKALEKFSELVEKLQESLELDAAT
LAAILLKRQQGKRPLFYIGEDPMIEAIERDKQRRKERREGGRDGRGRDRNFNNQDWDTYQ
LQVGREQGVQVKDIVGALANELGLVKGSIGAIKLAQGETYVQLPKAMSSETANKLRKLRI
RQKEVGAVVCDFDDFREPRGRRDGGRRDGGRRDGGGYRGNRDGNREGGYRGNRDGNREGG
YRGNREGGRGNREGGRRDGERRFDRNRGGDHRGNYRGERGHGRGNRED
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atgacagattctgtaattcagtttagcgatctagcgcttaacgactctatcctttcagct
cttgatggtatgggttttgtttcaccaactccaattcaggctgctgctattccgcaccta
ttggctggtaaagacgcactaggtaaagctcaaactggtactggtaaaactgcagctttc
tctctacctcttttaaacaagctagaccttgcacagcgtaagcctcaagcaatcgtactt
gctccaactcgcgaactagcgatccaagtagcggctgaagttaagaacttaggtcaaaac
atcgctggtcttaaagttcttgagatctacggtggtgcatcgattgttgatcaaatgcgc
gcactgaaaaacggtgctcacatcgttgttggtactccgggccgtgttcaagaccttatc
aaccgtgatcgtctacacctagacgaagtacacacattcgttcttgatgaagcggatgag
atgctaaacatgggcttcgttgatgacgtaactgaaatcatggagcacgcacctgaatca
gcacaacgtgtactattctctgcgactatgcctccgatgcttaagagcattgttgagcgc
ttcctacgtgatccagaaacagtagacgttgcaggtaaaaaccacactgtagacaaagta
gaacagcagttctgggttgttaaaggtgtagaaaaagacgaagcaatgtctcgtcttcta
gaaactgaagagactgatgcgtcaatcgtattcgtacgtactcgtcaagacactgagcgt
ctagccgattggctatgtgcacgcggcttcaaagcttctgcactacacggtgacattcct
cagtctctacgtgaacgtactgttgatcacatcaaacaaggtgttatcgacattctagtt
gcaacagacgttgtagcacgtggtcttgacgttccacgtatcacgcacgtattcaactac
gacatcccattcgatgttgagtcttacatccaccgtatcggccgtacaggtcgtgctgga
cgtaaaggtaaagcgatccttctagttcgcactaaccaactacgtatgcttcgcactatt
gagcgtgtaactaagtcatcaatggaagagatccaacttccacaccgtgacaaagttgca
gaagctcgcgtagcaaaacttggtgcagagcttgaagctgataaagaacacaaagcgcta
gagaagttctctgagctagttgaaaaactacaagagtctcttgagctagacgcggcaaca
ctggctgccattcttcttaagcgtcagcaaggtaagcgcccactattctacattggcgaa
gacccaatgattgaagcgattgagcgtgacaagcagcgtcgtaaagagcgtcgtgaaggc
ggccgtgatggtcgtggtcgtgaccgcaacttcaacaaccaagactgggatacataccag
ctgcaagttggtcgtgagcaaggcgttcaggttaaagacatcgttggcgcattggcaaac
gaacttggcctagttaaaggttcaatcggtgcgattaaactagcacaaggcgaaacttac
gttcagctaccaaaagcaatgtcttcagagactgctaacaagctacgtaaactacgcatt
cgtcagaaagaagttggcgcggtagtgtgtgactttgatgacttccgtgaacctcgtggt
cgtcgtgatggcggtcgccgtgacggtggacgtcgcgatggtggcggttaccgtggtaat
cgtgatggaaaccgcgaaggcggctaccgtggtaaccgtgacggaaaccgcgaaggtggc
taccgtggcaaccgtgaaggcggtcgtggtaatcgcgaaggtggtcgtcgtgatggtgag
cgtcgctttgaccgtaaccgtggtggcgatcaccgtggtaactaccgtggcgaacgtggc
catggtcgtggtaaccgcgaagattaa
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