Vigna umbellata (ricebean): 124819435
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Entry
124819435 CDS
T09662
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124819435
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vum03041
]
124819435
Enzymes [BR:
vum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124819435
Spliceosome [BR:
vum03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
124819435
Complex C
U5 SnRNP specific factors
124819435
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
DEAD
SNRNP200_wHTH
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
AAA_11
T2SSE
Motif
Other DBs
NCBI-GeneID:
124819435
NCBI-ProteinID:
XP_047146915
LinkDB
All DBs
Position
Unknown
AA seq
2184 aa
AA seq
DB search
MAHLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLWGKIDPKSFGDRAY
RGRPVELDEKLEKAKNKKKKKDRDAAADAAASVPSKRRRVQHESVLSASDDGVYQPKTKE
TRAAYEAMLSVIQHQLGGQPLSIVSAAADEILAVLKNDTLKNTDKKKDIEKLLNPIPNHV
FDQLVSIGKLITDFQEAADVSNGNSAMDGEEGLDDDVGVAVEFEENEDDDEESDLDIVQD
DEEEEEDGVEQNGSAAMQMGGGIDDEDMEDGNEGMSLNVQDIDAYWLQRKISLAFEQQID
PQQCQKLAEEVLKILAEGDDREVESKLLFHLEFDKFSLIKFLLRNRLKIVWCTRLARAQD
QEERERIEEEMKGTELQPILEQLHATRASAKERQKNLEKSIREEARRLKDDTGGDGDKER
DRGRRGLADRDGESGWLKGQRQMLDLDNIAFAQGGFFMAKKKCDLPDGSYRHLSKGYEEI
HVPALKAKALDPNEKLVKISSMPDWAQPAFKGMTQLNRVQSKVYETALFKPDNLLLCAPT
GAGKTNVAVLTILQQIARHRNPEDGSIDHSAYKIVYVAPMKALVAEVVGNLSNRLQEYDV
KVRELSGDQSLTRQQIEETQIIVTTPEKWDIITRKSGDRTYTQLVKLVIIDEIHLLHDNR
GPVLESIVARTVRQIETTKDYIRLVGLSATLPNYEDVALFLRVDLKKGLFYFDNSYRPVP
LSQQYVGITVKKPLQRFQLMNDICYEKVMAVAGKHQVLIFVHSRKETAKTARAIRDAALG
KDTLGRFLKEDSASREILQTHTDLVKSNDLKDLLPYGFAIHHAGMTRTDRQLVEDLFADG
HVQVLVSTATLAWGVNLPAHTVIIKGTQIYNPEKGAWTELSPLDVMQMLGRAGRPQYDSY
GEGIIVTGHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAREACNWIGYTY
LYVRMLRNPSLYGIAPDILTRDITLEERRADLIHTAATILDRNNLVKYDRKSGYFQVTDL
GRIASYYYITHGTISTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRV
PIPIKESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVFITQSAGRLLRALFEIVLKRGW
AQLAEKALNLCKMVTKRMWSVQTPLRQFNGIPSDLLTKLEKKDLAWERYYDLSSQEIGEL
IRAPKMGRTLHKFIHQFPKLNLAAHVQPITRTVLRVELTITPDFAWDDRIHGYVEPFWVI
VEDNDGEYILHHEYFMLKKQYIDEDHTLNFTVPIYEPLPPQYFIHVVSDKWLGSQTVLPV
SFRHLILPEKYPPPTELLDLQPLPVTALRNPSYEALYQDFKHFNPVQTQVFTVLYNSDDN
VLVAAPTGSGKTICAEFAVLRNHQKGPDSVMRVVYVAPIEALAKERYRDWERKFGNGLKL
RVVELTGETATDLKLLEKGQIIISTPEKWDALSRRWKQRKHVQQVSLFIIDELHLIGGQG
GPVLEVVVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPL
EIHIQGVDIANFEARMQAMTKPTYTAIVQHAKNKKPALVFVPTRKHVRLTAVDLITYSGA
DSGEKPFLLRSPEELEPFLDKISDEMLKVTLREGVGYLHEGLNSLDHDIVTQLFDAGWIQ
VCVLNSSMCWGVTLSAHLVVVMGTQYYDGRENAQTDYPVTDLLQMMGHASRPLVDNSGKC
VILCHAPRKEYYKKFLYEAFPVESHLHHFLHDNLNAEIVAGIIENKQDAVDYLTWTFMYR
RLTQNPNYYNLQGVSHRHLSDHLSEMVENTLSDLEASKCMTIEDDMDLSPLNLGMIASYY
YISYTTIERFSSSVTSKTKMKGLLEILSSASEYAQLPIRPGEEEVVRKLINHQRFSFENP
KVTDPHVKANALLQAHFSRQFVGGNLALDQKEVLLSANRLLQAMVDVISSNGWLSLALLT
MEVSQMVTQGMWERDSMLLQLPHFTKDLAKKCQDNPGKSIETVFDLLEMEDDERRELLGM
SDSQLLDIARFCNRFPNIDLSYEVLDSDNVRAGEDVTVLVTLERDLEGKTEIGPVDAPRY
PKAKEEGWWLVVGDTKTNLLLAIKRVSLQRKLKAKLEFAAPADTGRKSYALYFMCDSYLG
CDQEYGFTVDVKEADGDDEDSGRE
NT seq
6555 nt
NT seq
+upstream
nt +downstream
nt
atggcgcacctaggtggaggtgcggaagcgcacgcgcggttcaagcagtacgagtaccgt
gccaactccagcttggttctcaccaccgactctaggccgcgcgacacgcatgagcccacc
ggtgagcccgagtctctatggggcaagattgacccaaagagcttcggcgaccgcgcctac
cggggccgaccggtggagctagacgagaagcttgaaaaggcgaagaacaagaagaaaaag
aaggaccgtgacgccgccgccgatgccgccgcctccgtcccctcaaagcggcgccgtgtt
cagcatgaaagtgttctctccgcctccgacgacggcgtgtaccagcccaagacgaaggag
acgcgcgcagcctatgaggccatgctcagtgtcatccagcaccagctcggcggccagccc
ctcagcattgtcagtgctgctgctgatgagatacttgctgtgcttaaaaacgatactctt
aagaacacggacaagaagaaagatatagagaagcttttgaatcccatacctaaccatgtt
tttgaccagctagtttcgattgggaagttgattactgactttcaggaggctgctgatgtt
tccaatgggaattcggctatggatggtgaagaggggcttgatgatgatgttggtgttgct
gtcgagtttgaggagaacgaggatgatgacgaggagagtgatttggatattgtgcaggat
gatgaggaagaggaggaggatggggtggagcagaatggttctgcggctatgcaaatgggg
ggtgggattgatgacgaggatatggaagatggtaatgaagggatgagtttgaatgtgcag
gatattgatgcgtattggcttcagaggaaaatctctctggctttcgagcagcagattgat
ccgcagcagtgccagaagctcgcggaggaggtgctcaagattctggctgagggggatgac
agggaggtggagagcaaacttttgtttcacctcgagtttgataagttcagcctcattaag
tttttgcttaggaataggttgaagattgtgtggtgtacacggttggcaagggcacaggac
caggaggagagagagaggattgaggaggagatgaagggaactgagttgcagccgattttg
gagcagttgcacgctacaagggcatccgcgaaggagaggcagaagaacttggagaagagt
ataagggaggaggctaggaggttgaaggatgacactggtggagatggggataaagagagg
gacaggggcaggagggggcttgctgatagagatggagagagtggatggttgaagggacag
cggcagatgcttgatcttgataacattgcttttgctcaaggtggttttttcatggctaag
aagaagtgtgacctgcctgatgggtcttataggcatcttagtaagggatatgaagagata
cacgtgcctgccttgaaagctaaagcgcttgatccaaatgagaagcttgtgaaaatatca
tctatgcctgattgggcacaaccggcttttaaaggaatgacacagttgaatagagtgcag
agcaaagtatatgagactgcactttttaagcccgataatcttctgctctgtgccccaacg
ggagctggaaaaactaatgttgcagttctcactatacttcaacaaattgcacggcatagg
aatcctgaggatggctcgattgaccatagtgcttataaaattgtgtatgttgcacctatg
aaagctcttgttgctgaggtagttgggaatttgtccaatagattgcaggaatatgatgtt
aaagtcagggagctcagtggagaccagtcactaacccggcaacagatagaagagactcag
attatagtgacaacccctgagaagtgggatattatcacccgaaagtcgggagaccgaact
tatacacagcttgtaaaacttgtgattattgatgagattcatctacttcatgacaacaga
ggacctgttcttgaaagtatcgttgctagaacagtaaggcaaattgaaaccacaaaggat
tatattcgtttggtgggactgtctgctactctccctaattatgaagatgttgcactgttc
ttgcgagttgatctgaagaagggtttgttttattttgataatagttacagacctgttcca
ctttctcagcagtatgttggaatcacagtgaagaagccacttcagaggttccagttgatg
aatgatatctgttatgagaaagttatggctgtggctgggaaacatcaggttcttatattt
gtacactctaggaaagaaactgccaaaactgctagagccatcagagatgccgcactggga
aaggacactctcggtaggttccttaaagaagatagcgcaagccgtgagattcttcaaact
catactgatcttgtaaagagcaatgatcttaaagatcttctgccatatggttttgctatt
catcatgctggtatgaccaggacagatcgccagcttgttgaagatctttttgctgatgga
catgttcaagtgttggtatcaactgcgacccttgcgtggggtgttaatctaccggcccat
acagtgattattaaaggaacacagatttataatcccgaaaagggggcctggactgaatta
agtcctcttgatgtgatgcagatgctgggtcgtgctggaaggccgcaatatgattcatac
ggtgagggaataattgttactggtcatagtgagttgcagtattacctctctcttatgaac
caacaacttcctattgaaagtcagtttgtgtccaagctggctgatcagctgaatgcagag
attgttcttggtactgtacaaaatgctagggaagcttgtaattggattggatatacttac
ttgtatgtccgcatgctgaggaatccttcgttgtatggtatagcacctgacatcctaaca
agggatataacattggaagagagaagggctgacttgatccatactgctgcaaccatcttg
gatagaaataatttggtgaagtatgataggaagagtggatattttcaggtcactgatcta
ggccgtattgctagctactactacataacacatggaaccatatcgacatataacgagcat
ttgaagcctacaatgggggacatagagctatgccgattgttctcattaagtgaagaattt
aagtatgtaacagtaaggcaggatgagaagatggagctagcaaaacttttggaccgtgtt
cccattcccatcaaggaaagtctggaagagccaagtgcaaagatcaatgttttactgcaa
gcatacatttcacaattaaagctcgaaggactctcactgacatctgatatggtctttata
actcagagtgctggacgccttttacgggcactatttgagattgttttgaaacgtggctgg
gcacaattggctgagaaggctttgaacttgtgcaaaatggtgaccaagaggatgtggagt
gtccaaactcctcttcgtcaattcaatggaattccaagtgatttactaacgaaattggag
aagaaagatctggcttgggaaaggtattacgatttatcatcacaagagataggtgaactc
attcgtgcaccgaagatgggaaggacacttcataaatttattcatcagtttcctaaactg
aaccttgcagcacatgtgcagccaattactaggacagttttgagagttgagctgactata
actccggattttgcttgggatgacagaattcatggatatgttgaaccattctgggtgatt
gtggaggataacgatggagaatacattcttcaccatgaatattttatgctgaaaaagcag
tatattgatgaggaccacacactgaatttcacagtgcctatttacgagcctcttccccct
cagtactttatccatgtcgtttcagataaatggcttgggtcccaaactgttttacctgtt
tctttcagacacctgatcttacctgaaaagtatcctccaccaactgaactactggatctg
cagccacttcctgtgactgcactgcgaaatccatcatatgaagctctatatcaggatttt
aagcattttaatcctgttcagacacaagttttcacagttttatacaattcagatgacaat
gtcctagttgctgctccaactgggagtggtaagactatatgtgcagaatttgctgttttg
aggaatcatcagaaaggtcctgatagtgtcatgcgtgttgtttatgttgcacccatcgaa
gctcttgccaaagagaggtaccgtgattgggagaggaagtttggaaatggtctaaaactg
agggtggttgagttgactggagaaactgcaactgacttgaaacttctcgagaaaggtcag
attattatcagtactcctgagaaatgggatgcattgtcccgtcgctggaaacagaggaaa
catgttcaacaagttagtcttttcatcattgatgagctccacttgattggaggtcaagga
ggtcctgttttagaggttgttgtttccaggatgcgatatattgctagtcaagttgaaaac
aagatacgcattgtggctttgtctacctcacttgcaaatgcaaaagatctcggagaatgg
attggagctacctcccatggtcttttcaatttccccccaggtgttcgtccagtgcctttg
gaaattcacattcaaggtgtagatattgctaactttgaggcaaggatgcaggcaatgacc
aagccaacttacactgctattgttcaacatgcaaagaataagaaacctgcgctcgtattt
gtacctactaggaagcatgttcggttgactgccgtggatctgattacatactcaggtgca
gacagtggagagaagccatttttgttgcggtccccagaagagcttgaacctttcctcgac
aagattagtgatgaaatgttgaaagttactttgcgtgaaggagtgggatacctgcatgag
ggcttgaacagtcttgatcatgacattgtgacacagctattcgatgcaggctggattcaa
gtttgtgttttaaatagttccatgtgttggggggtgacattgtcagctcatttggtcgtt
gtgatgggcacacagtactacgatgggcgagagaatgcacagacagattaccctgttact
gatctcctgcagatgatgggtcatgccagccgtcctctggtagacaattctggaaaatgt
gtcatcttgtgccatgctcctcgtaaggagtactacaagaagtttttatatgaagcattc
cctgttgaaagccatcttcatcacttcttgcatgataacttgaatgctgaaattgttgct
ggaattattgagaacaagcaagatgctgtagattaccttacatggacattcatgtacagg
cggctcacacagaatcccaactactacaatttacaaggagttagtcacagacatctttct
gatcacctctcagaaatggtggaaaataccttgagtgatttagaagcaagcaagtgcatg
actattgaggacgatatggacctttctcctctcaatcttggaatgatagcatcttattat
tacatcagttacacaacaattgaaaggttttcatcatcggtgacttcaaaaacaaaaatg
aaaggtctgttggagattttgtcttcagcttcagagtatgctcagcttccaatacgacct
ggagaggaagaggttgttcgtaagttgattaatcaccagaggttttcctttgaaaacccc
aaggtcacagatccgcatgtaaaagctaatgccttgctacaggcccatttctctaggcaa
tttgttggtgggaaccttgcattagaccagaaggaggtgcttctttctgcaaatagactg
cttcaggcaatggtagacgtgatatcaagcaatggttggctgagtctggctcttcttact
atggaggtcagtcaaatggtgacacagggtatgtgggaacgtgattccatgctactacag
cttcctcatttcacaaaggatctggccaaaaaatgccaggataacccagggaagagtatc
gaaactgtttttgatttattagagatggaggatgatgaaaggcgtgaattactgggcatg
tcagattcacagttgttggatattgcccgattttgcaaccggtttcctaatattgatttg
tcatatgaggttctggacagtgacaatgttcgagctggggaggatgtaactgtactggtc
actcttgagcgggatcttgagggaaagacagaaataggacccgttgatgctccaaggtat
ccaaaagccaaggaggaaggatggtggcttgttgttggtgataccaaaaccaatctgttg
cttgccattaaacgggtttccctgcagaggaagttaaaagccaaactggagtttgctgct
cctgctgatactggaaggaaatcctatgctctttatttcatgtgtgattcatacctgggt
tgtgatcaggaatatggtttcactgttgatgttaaggaagctgatggtgacgatgaagat
agcggcagagaatga
DBGET
integrated database retrieval system
