Vigna umbellata (ricebean): 124819820
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Entry
124819820 CDS
T09662
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124819820
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vum03019
]
124819820
03012 Translation factors [BR:
vum03012
]
124819820
Enzymes [BR:
vum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124819820
Messenger RNA biogenesis [BR:
vum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124819820
Translation factors [BR:
vum03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
124819820
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
HA2_N
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
124819820
NCBI-ProteinID:
XP_047147365
LinkDB
All DBs
Position
Unknown
AA seq
512 aa
AA seq
DB search
MMFQVEATIEYICRNEGSGAILVFLTGWDEISKLLDKLKGNNLLGDPHKFLILPLHGSMP
TANQCEIFDRPPPNKRKIVLATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPS
WISKASAHQRRGRAGRVQPGVCYRLYPKLVHEAMPQYQLAEILRTPLQELCLHIKSLRLG
TVASFLEKALQPPDPLAVKNAIELLKTVGALDEHEELTPLGRHLCNIPLDPNMGKMLLMG
SIFQCLNPALIIAAALAYRNPFVLPINRKEEADAAKQSFAGDSCSDHIALLKAFEGWKDA
KRSGNEKQFCWDNFLSPVTLRLIDDMRMQFLNLLSDIGFVDKSRGPNAYNQYSHDLEMVC
AILCAGLYPNVVQCKRRGKRTAFYTKEVGKVDIHPASVNAGVHLFPLPYIVYSEKVKTTS
IYIRDSTNISDYALLLFGGNLVPSKSGEGIDMLGGYLHFSASKSVIELIRKLRGELDKLL
NRKIEEPGFDVSSEGRGVVAAAVELLHSQVIR
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgatgtttcaggtagaggctacaattgaatatatatgtcggaatgaaggtagtggagca
attcttgtatttctcactggctgggatgaaatctctaaactacttgacaaacttaaagga
aataacttactcggagaccctcacaagtttttgatccttcctttacatggttcaatgcca
actgccaaccaatgcgaaatatttgatcgtcctcctccaaacaagaggaaaattgttctg
gcaacaaatattgctgagagtagcatcaccatagatgacgttgtgtatgtcatagactgt
ggcaaagcgaaggagaccagctatgatgctctaaataagcttgcctgcttgttgccatca
tggatttcaaaggcttcagctcatcagagacgtggacgagctggtcgagtgcaacctgga
gtttgttataggttatacccaaaactggtccatgaagcaatgcctcaataccagttagct
gaaatcctccgaacacctttgcaagagttgtgccttcatattaaaagtttgcggcttgga
actgtggcatcatttttagaaaaggcacttcaaccaccagatcctttagctgttaagaat
gctattgaacttcttaaaacagttggggcattagatgaacacgaggagctcactccactg
ggtcgccatctttgtaacatacctttggacccaaacatgggaaagatgcttctcatgggc
tctatctttcagtgcctcaatcctgccttaattattgctgctgctcttgcttaccgcaac
ccatttgtcttacccataaacagaaaagaggaagccgatgcggcaaagcaatcttttgct
ggtgattcttgcagtgatcacatagcccttctcaaagcttttgagggatggaaggatgca
aaacgaagtgggaatgagaagcagttttgttgggataattttctgtcccctgtaaccttg
cggttgattgatgatatgaggatgcagtttctcaatttattatctgacattggatttgtt
gacaagtccaggggacctaatgcttacaaccagtacagtcacgatttggagatggtttgt
gcaattctttgtgccgggctctaccccaatgttgtgcagtgcaaaagaagagggaaaagg
acagcattttacactaaagaagtagggaaggttgacatccatcctgcttctgttaatgct
ggggttcatctctttcctctgccgtacattgtgtatagtgaaaaggtgaaaacaaccagc
atctatattagagactctacgaatatttcagattatgccctacttctatttggtggtaat
ctagtccccagcaaaagtggtgagggcattgacatgcttggaggttaccttcatttctct
gcttcaaaaagtgttatcgagttaataaggaaattacgtggggagcttgacaagcttctg
aacagaaaaattgaagaacctggatttgacgtttcttcagaaggaaggggtgtggttgcc
gctgctgttgagttactgcatagtcaagtcattagataa
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