KEGG   Vigna umbellata (ricebean): 124822205
Entry
124822205         CDS       T09662                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
vum  Vigna umbellata (ricebean)
Brite
KEGG Orthology (KO) [BR:vum00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:vum03009]
    124822205
Ribosome biogenesis [BR:vum03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    124822205
SSDB
Motif
Pfam: Beta-prop_WDR3_1st WD40 Beta-prop_WDR5 Beta-prop_THOC3 Beta-prop_IFT122_1st Beta-prop_WDR36-Utp21_2nd WD40_Prp19 WD40_CDC20-Fz EIF3I Beta-prop_EML_2 WD40_WDHD1_1st WDR55 Beta-prop_TEP1_2nd PAC11 WD40_Gbeta Beta-prop_WDR3_2nd Beta-prop_EML Beta-prop_WDR36-Utp21_1st Beta-prop_CAF1B_HIR1 Beta-prop_WDR75_1st Beta-prop_TEP1_C ASA1 Beta-prop_WDR90_POC16_2nd DSE1_N Beta-prop_SCAP NBCH_WD40 WD40_MABP1-WDR62_1st Beta-prop_WDR41 WD40_RFWD3 Beta-prop_VPS8 PEP5_VPS11_N DNAI3_WD Beta-prop_IP5PC_F Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_NOL10_N Beta-prop_HPS5 WD40_MABP1-WDR62_2nd Beta-prop_WDR19_1st Beta-prop_DCAF4 ANAPC4_WD40 WDR90_beta-prop_4th CFAP251_N TRM82_WD PROPPIN WD_LRWD1 TMEM125 Beta-prop_WDR75_2nd Beta-prop_ACSF4
Other DBs
NCBI-GeneID: 124822205
NCBI-ProteinID: XP_047150144
LinkDB
Position
Unknown
AA seq 462 aa
MRQRELVGEGEAVVACSDKSMKIGASMWDLETGEKLLHIPTCASPPFGFLCLKNRFLVAS
QLNRHGSVGDGAIAVWSFHKPQQPLLNYTVEAIGTLSCTNDGIYLVGGALSGNVYLWDVT
SGKMLKTWRAHKKCLNCMLFSFDNSLIISSSDDGMICVWSMISLLDIEETRSTPPPLHCL
SGHISSITGLLTAPNSYHSILISSSLDGTCKVWDFISGKHMQTQAYPFAITSIALHQRES
LLFCGTEKGIIFVEKLDVGRGEGPFLVIKRQPLELKGHSGAITALTSSRSSLISASEDCS
ICVWDIFSWEITRRFSLHKAGKVTNLVVVSLSSLLSTSKNRRVSNEYIISPLDKYPQLSN
SIKGTLHSSLYRGNQTCIDLKSSELLKQKIFDTQKVDVPTITTLQMRVEASVKNHVWATN
MTKHVMVINKQLKSTLLGMMQHRLFRPNNINLQKTNRKKPKI
NT seq 1389 nt   +upstreamnt  +downstreamnt
atgcgacagagggagttggtaggagagggagaggcagtggtggcttgcagtgacaagagc
atgaaaataggagcgtcgatgtgggacttggaaacgggagagaaactgcttcacattcct
acatgtgcctcgccacctttcggcttcctgtgtttgaaaaatcgcttcctagtggcgtcg
caactcaacagacacggctccgttggcgatggagccattgctgtttggtcctttcacaag
cctcaacaaccacttttgaattacacagtggaggctattgggacactttcttgtacaaat
gatggcatatatcttgttggaggagctttgtctggaaatgtttatctatgggatgtgacc
agtggaaaaatgttgaagacttggagggctcataaaaaatgtttaaactgcatgttattt
tcatttgacaattctcttatcatttctagctcagatgatggaatgatttgtgtttggtcc
atgattagtttgttagacatagaagaaacgagaagtacgccgcctccattgcattgtttg
tcaggacatatatcctccataacaggtcttttaacggcaccaaatagttaccactcaatt
ttaatatcaagttcccttgatggcacgtgcaaggtttgggattttatctcaggaaaacat
atgcaaactcaagcttatccttttgccataacttccattgcccttcaccaaagagaaagt
cttttgttttgcggaacagaaaaaggaataatatttgtcgagaagctcgatgttggtcgt
ggagaaggtccttttcttgtcattaaacggcagccacttgaactgaaaggacacagtgga
gccattactgccttaacctcatctcgatcatccctaatatctgcctctgaagattgttcg
atttgcgtttgggacatctttagttgggaaatcactcgaaggtttagtctccataaagca
gggaaagtaaccaatcttgtggtggtttcactatcttcgttactttctacatcaaaaaac
aggagagtctcgaatgaatatattatttctccacttgacaagtatccgcaattgtccaac
tcaatcaagggaactctccattcctcattatatagaggaaatcaaacttgcattgatttg
aaaagttctgaattattgaaacagaagatttttgatacacagaaagtagatgtaccaaca
atcacaaccttgcaaatgagagtggaagcaagtgtaaagaatcatgtatgggcaacaaac
atgacaaaacatgtcatggtgataaacaaacagttgaagtcaacactattaggcatgatg
caacatagactgtttcgtccaaacaacatcaacttgcaaaaaactaatagaaagaaaccc
aaaatttag

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