Vigna umbellata (ricebean): 124822263
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Entry
124822263 CDS
T09662
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124822263
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vum03041
]
124822263
Enzymes [BR:
vum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124822263
Spliceosome [BR:
vum03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
124822263
Complex B
124822263
Complex C
U2 SnRNP specific factors
124822263
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
124822263
NCBI-ProteinID:
XP_047150214
LinkDB
All DBs
Position
Unknown
AA seq
766 aa
AA seq
DB search
MSKRKFGFEGFGINRQSTYSFERSQAPQRLYVPPSSRHGHDNYEDTDLDNIDYDDNNNDE
GNKNSNDDDEIDPLDAFMEGIHEEMKAATPPKPKEKAEDRYRDDDDDPMESFLKAKKDLG
LTLASEALHAGYDSDEEVYAAAKAVDAGLIEYDSDDNPIVIDKKKIEPIPALDHSSIDYE
PFNKDFYEETPSISGMSEQDVSEYRKSLAIRVSGFDVPKPIKAFEDCGFPSQIMNAIKKQ
GYEKPTSIQCQALPVVLSGRDIIGIAKTGSGKTASFVLPMIVHIMDQPELQKEEGPIGVI
CAPTRELAHQIYLEAKKFAKAYGVRVSAVYGGMSKLEQFKELKAGCEIVVATPGRLIDML
KMKALTMTRATYLVLDEADRMFDLGFEPQVRSIVGQIRPDRQTLLFSATMPRKVEKLARE
ILTDPIRVTVGEVGMANEDITQVVCVIPSDTEKLPWLLEKLPEMIDQGDTLVFASKKATV
DEIESQLAQRGFKVAALHGDKDQASRMDILQKFKSGLYHVLIATDVAARGLDIKSIKSVV
NFDIAKDMDMHVHRIGRTGRAGDKDGVAYTLITQKEARFAGELVNSLVAAGQNVSVELMD
LAMKDGRFRSKRDARKGGGKKGRGRGGGGGGRGVRGVDFGLGIGYNPESNNAPSNPAPTR
SAAVNSLRTGMMSQFRNNFVAASSNSQNQAFGNNTSMAANKRPALPGFVSGGSIGGDVNT
YQHTASPSPASSAVNSSTQGSGVNSGQKSMNSSKPKERRRPSGWDR
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaagaggaagttcggattcgaaggcttcggcataaaccgccaatccacctacagc
ttcgagcgatcccaggcccctcagcgactctacgtccctccctcctcccgtcacggccac
gacaactacgaggacaccgacctcgacaacattgactacgacgacaacaacaacgacgaa
ggaaacaagaacagcaacgatgacgacgaaattgaccctctcgacgccttcatggagggg
attcacgaggagatgaaggcggcgacgccgcccaagccgaaggagaaggctgaggaccgg
taccgggacgacgacgacgatcccatggagagctttttgaaggcaaagaaggatttaggg
ctgactctcgcgtccgaggcgctgcacgctgggtacgattctgatgaggaggtttatgct
gctgccaaagccgtggacgctggtttgatcgagtatgattccgacgataaccctattgtt
attgacaagaagaaaattgagcccattcctgctctcgatcactcttccattgattacgaa
cccttcaataaggatttttatgaagagacaccttcaatatcaggtatgagtgagcaggac
gtaagcgaataccggaagagtttggctattcgtgtatctggttttgatgttcccaagcca
ataaaggctttcgaggactgtggatttccgtctcagattatgaatgctataaaaaaacaa
gggtacgagaagccgacatccatacaatgtcaggctttgccggttgtgctttccggcagg
gatattattggtatagccaaaactggttctggtaaaacggcttcttttgtgcttcctatg
attgtgcatatcatggatcagcctgagcttcagaaggaagaggggcctataggggtgata
tgtgcacctaccagagaattggctcatcagatatacctggaggccaagaaatttgcaaaa
gcgtatggggtacgtgtatctgctgtctatggtggaatgtcaaagcttgaacagttcaaa
gaactcaaagctggatgtgagatagttgttgctacccctggcagattgatagacatgctg
aaaatgaaggcattgacgatgacgagagcaacttacctggtgcttgatgaggcggatcgg
atgtttgatctggggtttgaacctcaagtaaggtccattgttgggcagattaggccagac
cgtcaaacattactcttttctgcaacaatgcctcgtaaagttgaaaagttggccagggaa
atccttacggatcctatcagagtaactgttggagaggtggggatggcaaatgaagatatt
actcaagttgtttgtgtgattccttctgatactgaaaagttgccttggcttctggaaaag
ctacctgaaatgattgatcaaggtgatactctagtttttgcttcaaagaaggccactgtg
gatgaaatagaatcgcagttggctcaaagaggctttaaagttgctgccctgcatggtgat
aaagatcaagcttctcggatggatattttgcagaagtttaaatccggtctctaccatgtg
ctcattgcaactgatgttgcagcccggggtcttgacatcaagtcaattaagtcagtggta
aactttgatattgcaaaggatatggacatgcatgtccatcgcattggtagaacaggtcgt
gctggtgacaaggatggggttgcgtacactcttataactcagaaagaagcgcgatttgct
ggtgaattggtcaatagcttagttgctgctggtcagaatgtgtccgtggagttgatggat
cttgcgatgaaggatgggagattcaggtcgaaacgtgatgcaagaaaaggaggtgggaaa
aaaggcagaggtagaggtggtggcggaggtggccgtggtgtgcgtggagtggattttggc
ttgggcattggatataatcccgaatctaacaacgcaccatctaacccagctcctactcga
tctgccgcagtaaattctctgcggactggaatgatgtcacaatttagaaacaactttgtt
gctgcttcgtcgaactctcagaatcaagcattcggtaacaatacaagcatggctgctaat
aagagaccggcactccctggttttgtatctggtggatcaattggtggtgacgtgaatacg
tatcagcacactgcttcacccagtcctgcttcttcagcggtaaattccagcactcaaggt
tctggagtaaattctggtcagaagagcatgaatagttctaaacccaaagagaggcggagg
ccatcaggttgggatagatag
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