Vigna umbellata (ricebean): 124822275
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Entry
124822275 CDS
T09662
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124822275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vum03019
]
124822275
03012 Translation factors [BR:
vum03012
]
124822275
Enzymes [BR:
vum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124822275
Messenger RNA biogenesis [BR:
vum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124822275
Translation factors [BR:
vum03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
124822275
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_22
AAA_19
nSTAND3
ATPase
ABC_tran
Rad17
Post_transc_reg
AAA_16
Myosin_head
PhoH
Motif
Other DBs
NCBI-GeneID:
124822275
NCBI-ProteinID:
XP_047150226
LinkDB
All DBs
Position
Unknown
AA seq
651 aa
AA seq
DB search
MRSSKFAVSLLIARAKSLQLHHLTCHCVASSSPTSTPLFKVFPSSIRNANAVATTRLFSS
YYSLEQFSDDEYDGDFENQQVSSTVANVDEWKWKLSMLLRSEKDQEIVSRDKKDRRDYEQ
IANLAKRMGLYSELFGKVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLLQEYL
DRLQLNSAKTTDSLDDGNSTNQVKEIDIDENDDSLVDESVMEKVLQKRSLRMRNMQRAWQ
ESPEGRKMLEFRKSLPSFMEKQGLLQAIAHNQVIVISGETGCGKTTQIPQYVLESQIESG
RGAFCNIICTQPRRISAMAVSERVSAERGEPLGETVGFKVRLEGMKGKNTHLLFCTSGIL
LRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSATLNAELFS
NYFGGAPTFRIPGFTYPVRAHFLEDVLEMTGYKLTSFNQIDDYGQEKLWKTQKQLAPRKR
KNQITSLVEDALSKSSFENYSSRARDSVASWAPDCIGFNLIEAVLCHICRKERPGAVLVF
MTGWEDISSLRDQLKAHPLLGDPNRILLLTCHGSMATSEQKLIFEKPPPNIRKVILATNM
AEASITINDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQASIYIS
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atgcgcagttcaaagtttgcagtgtctctgcttatagcacgtgccaagtcccttcaactt
catcacctcacgtgtcactgcgtcgcttcttcttctccaacttcaacgccactcttcaag
gttttcccttcttccatacgaaatgcgaatgccgtcgccaccacgcgcctcttctccagc
tactattccctcgaacagttttccgatgatgaatacgacggtgactttgagaaccagcag
gtatcgtctacggtggccaatgtagacgagtggaaatggaaactcagcatgctgttacgc
agcgaaaaggaccaggagattgtatcaagagataaaaaagataggagggactatgaacag
atagctaaccttgccaaaagaatggggctatacagtgagttgtttggaaaagtggtcgtt
gcaagcaaggtacctcttcccaactaccgtccagatttggatgacaaacgtccacaaaga
gaggtggtgattccactaagcttgcaaaggagggttgagggtttgctgcaggagtacctt
gatagacttcagttaaattctgcaaagacaactgacagcctggatgatgggaactccacc
aatcaagttaaagaaatagacattgacgaaaatgatgattctttggtggatgaatctgtc
atggaaaaggttctccaaaagaggagtttgaggatgcgcaatatgcaaagagcttggcag
gaatcacctgaaggcaggaaaatgttggagttccggaagtctctaccatcatttatggaa
aagcaaggtttacttcaagctatagcacacaatcaggtgatagttatatctggagagact
ggctgtggtaaaaccactcaaattcctcaatatgtattagaatcacagatagagtctggc
cgtggagcattttgtaacattatttgcacccagcctcgaaggatatcagccatggcagtg
tcggagagagtgtcagccgagcgtggagagcctcttggtgaaacagtgggcttcaaagtt
cgattagaaggaatgaaagggaaaaacacccatcttctattttgcaccagtggtatatta
cttagaaggttgctgagtgatcgtaatctgaatggtataacccatgtttttgtcgatgaa
attcatgaaagaggcatgaatgaagacttcttattgattgtgctaaaggatctgcttcca
cggcgtagggatttaaggttggttttaatgagtgccaccttgaatgctgagctgttttca
aattattttggaggtgctcctacatttcggattccgggtttcacctatcctgttagagct
cactttttagaagatgtgttggaaatgactggatacaagttgacttccttcaaccaaatt
gatgattatggtcaagagaaactgtggaaaacacaaaagcaattggcaccacggaagagg
aaaaatcagatcacttctcttgttgaggatgctctttcaaaatcaagctttgagaactac
agctccagggcacgtgattcagtggcatcttgggcacctgactgcatagggttcaatctc
attgaggctgttctatgccatatatgtcgtaaggaacgtccaggtgctgtcttagtgttt
atgaccggatgggaggatataagttctctaagagatcaacttaaagcacatcctctttta
ggagatcccaataggattctacttctaacatgtcatggttcaatggcaacttcagaacag
aaactcatatttgagaaaccacctccaaatataaggaaagtaatacttgctacaaatatg
gctgaggcaagtataacaatcaatgacatagtttttgtggtcgattgtggaaaagcaaaa
gagaccacatatgatgctttgaataacacaccttgtcttctaccttcttggatatcacaa
gcatctgcacgtcaggcaagtatctacatctcttga
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