Vigna umbellata (ricebean): 124823429
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Entry
124823429 CDS
T09662
Name
(RefSeq) nuclear exosome regulator NRDE2 isoform X1
KO
K26109
nuclear exosome regulator NRDE2
Organism
vum
Vigna umbellata (ricebean)
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vum03019
]
124823429
Messenger RNA biogenesis [BR:
vum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124823429
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NRDE-2
TPR_14
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
DUF5890
RDD1
TPR_11
Motif
Other DBs
NCBI-GeneID:
124823429
NCBI-ProteinID:
XP_047151585
LinkDB
All DBs
Position
Unknown
AA seq
1158 aa
AA seq
DB search
MEQNPQSPSSDEQKPSLFPLFAASSSLQATTTSSNPQWLSNSSFTTDISVINDAVASQLN
REATLSPPQNDEDDENRAEAHPLPSRYEILESSESDGGGRDRERRKKKKKKKRRRDSSAE
RGGFDGFGSRKSRVRVWADSESNVTKDYYFDSHGDRDNLAFGCIYRMDVARYKPYNPLKL
SGLHTRGLYWWNRSGSLLDRDGDVDALDAKMKSAGRYWSGKYMALERHKSFKRIHLVASK
LSPVTMQDEFIPLSESDAGSSLGAVDSDSVSKTLTPLEESWEDEMLNKTREFNKLTREHP
HDGKVWLAFAEFQDKVAGMQRQKAARLQTLEKKISILEKAVELNPDNEEILLCLLKAYQM
RDSSDVLIARWEKILLQHYGSCKLWREFLLTVQRNFSRFKVSEVRKMYVHAIEALSASCS
KHSRQQVPQGADPSSSDPAIVELELGLVDIFLSLCRFEWQAGYRELATALFQAEIEFSLF
CPPLLLTEQHKHRLFKDFWKSGGARVGEEGALGWSTWLEKEEETRLKVINEELVRESDEG
GWTGWSEPRFKDNEDVTMVENEDNNDVVMEDTQDEEEYNEVETEVDTENLLKMLGIDINN
GDGGEVNDTATWIKWSKEESSRDCDQWMPVRRKSNTTSSEAQKTDEDDQLLRVVLYEDVN
EYLFSLRTTEARLSLLSQFIDFYGGKMSQLFCSNSPTMAYSIRSLENLPDSMLEKLKRIH
EVLTKTQNTPTGFSFEFLSDSFSRNADIMKFIRNAVLLCLTVFPRNYMLEEAVLIFEELY
VTKMNSSNSMVTPCRSLAKSLLKSDRQDLLLCGVYARREATYGNIDHARKVFDMALLSVE
ALPGELQSNSPLLYFWYAEVEVANNTAHGSESSCRAIHILSCLGSGTKYIPFKSQASGVQ
LLRAHQGFKEKLRTVWSSWVRGIINDQSVALICSAALFEELTTGWDAGIGVLNQAFSMVL
PERRSQGYHLEFLFNYHIKILQRHKRESSLMKVWESILHGLQIYPFSPELLKDLVEIGHY
YTTSNKLRRILDDCCYKKPSVVLWLFALSFEMFRGGSEHRIRGLFEKALSNDGLSSSVVL
WRCYIMFEMEMANDPSAARRAFFRAIHSCPWSKRLWLDGFLKLNSVLTAKELSDLQEVMR
DKELNLRTDIYEILLQES
NT seq
3477 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcgccgtcctccgacgaacaaaagccttctttattccctctg
ttcgcagcctcctcgtctctccaagccaccaccacttcttcgaatcctcaatggctcagc
aactctagcttcaccaccgacatctccgtcataaacgatgccgttgcctcacaactcaat
cgcgaagcgactctatcgccgccacaaaatgacgaggacgacgaaaatcgcgctgaggcg
catcctctcccttctcggtacgagattctcgaatcttctgaatccgacggtggcggaagg
gatagagagaggaggaaaaagaagaagaaaaagaagcggaggcgtgattcatctgcggag
agaggcgggttcgacggtttcggttcgcggaagtcgcgtgttcgagtttgggcggattca
gagagcaacgttaccaaggattattactttgattctcacggagatcgggataatctggcg
tttggatgcatctatagaatggatgttgcccgatacaaaccttacaatcccttgaaactg
tctgggctacacactcgaggtttgtattggtggaataggagcggttcactgttggataga
gatggtgatgttgatgcactagatgctaaaatgaagtctgctggtcgttactggtctgga
aagtatatggctttggagagacataagagctttaagcgtattcatcttgttgcttcaaaa
ttgtctcctgtcactatgcaagatgagtttatacctttatctgaatcagatgctgggtca
tctcttggagctgttgacagtgattctgtctccaaaactttgacacctcttgaagaatct
tgggaagatgaaatgttaaacaaaactagggagttcaacaaactaacaagggagcacccc
catgatggaaaagtttggttagcttttgcagagttccaagataaggttgcagggatgcaa
cggcagaaagctgctcgattgcaaactcttgagaagaagattagcattctggagaaggca
gttgagctcaatccagacaatgaagagatattgctttgccttttgaaagcttatcagatg
agagacagctcggatgtgctaattgcaagatgggaaaagatacttttgcaacactatggt
agttgtaagttgtggagagaattcttgctgacagttcagagaaatttctccagattcaag
gtttcagaggtcaggaagatgtacgttcatgcaattgaagctctatctgcttcatgcagc
aagcactctaggcagcaggtccctcaaggtgctgatccttcttcatcagatcctgcaatt
gttgaattagaacttggtcttgtggatatatttcttagtctttgcagatttgagtggcag
gctggttatagagaattggccactgctttatttcaggctgaaatagagtttagtttgttt
tgtccccctttgctgctcactgagcagcataaacacagactgtttaaggatttttggaaa
agtggtggtgctagagttggggaagaaggggctcttggttggtccacatggttggagaaa
gaggaggaaactaggctaaaagttataaacgaggagctcgtacgtgaaagcgatgagggt
ggttggactggttggtcagaacctaggttcaaggataacgaggatgttactatggttgaa
aatgaagacaacaatgatgtggttatggaggatactcaagatgaagaggaatataatgaa
gttgagacagaagttgatactgagaatcttctgaagatgctgggtattgatatcaataat
ggggatggtggtgaagttaatgacactgccacttggatcaaatggtcaaaagaagagtct
tctagagattgtgatcagtggatgcctgttcgtaggaaatcaaatacaacctctagtgag
gcgcagaaaacagatgaggatgaccaactcttgagagttgtattgtatgaagatgtgaat
gaatacctattctctctacgaacaacagaggctcgactatctttgttgtcccaattcatt
gacttctatggtgggaagatgtctcagttgttttgctccaacagcccaacaatggcatac
agtatccgtagtttggagaatctgccagattctatgttagagaagttgaaacgcatccat
gaagttttgactaaaacacagaacactcctactggttttagttttgaattcctatcagac
agtttctcaaggaatgctgatatcatgaaatttatacggaatgctgttttactttgttta
actgtttttccacgtaattacatgttggaagaagctgttcttatttttgaagagctatat
gttacaaaaatgaattcttctaacagtatggttacaccgtgtcgatctttagcaaaatct
cttctgaaaagtgatcgccaggatctattgctatgtggtgtatatgcacgaagagaggct
acttatggtaacattgatcacgcaaggaaagtatttgacatggcactgttgtctgttgag
gcgcttcctggggaactacagtccaattctcctctcctatatttctggtatgctgaagtg
gaggttgcaaataacactgcccatggtagtgaatcttcatgtcgtgcaatacatatatta
tcatgcttaggaagtggtacaaaatacattccctttaaaagtcaagcatcaggtgtgcaa
ctccttagagcacatcaaggatttaaagaaaaattaagaacagtatggtcatcttgggtt
cgtggcataataaatgaccagtctgtagctctaatatgttctgctgcactgtttgaggag
ctgaccactggatgggatgcgggtattggagttttgaatcaagctttttcaatggtgctt
ccagaaagaagaagtcaaggttatcatcttgaatttttgtttaactatcatataaagatt
cttcaaagacataagagagaatcaagtctcatgaaagtttgggaatccatcttgcatggt
ctccagatatatcccttcagtcctgaacttctaaaagatttagtagagatcggccattat
tacaccacatctaataaactgcggcggattctagatgactgttgttacaagaaaccatct
gtagttctctggctttttgcgttgtcattcgaaatgtttagaggtggttcagaacacaga
atccgaggattgttcgaaaaggcattgagtaatgacggtcttagcagctcagttgtactg
tggcgttgctacatcatgtttgaaatggaaatggcaaatgatccttctgcagctcgtcgt
gccttcttccgggctatccattcctgcccctggtcaaaaaggctatggttggatggtttt
ctcaagcttaattctgtccttactgcaaaagagctatctgatctacaggaagttatgcgt
gataaggaactgaatctaagaactgacatctatgagatccttctgcaagagtcatga
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integrated database retrieval system
