Vigna umbellata (ricebean): 124825223
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Entry
124825223 CDS
T09662
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124825223
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vum03041
]
124825223
Enzymes [BR:
vum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124825223
Spliceosome [BR:
vum03041
]
Complex C
Other components
Step II factors
124825223
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
AAA_24
SLFN-g3_helicase
nSTAND3
AAA_30
Flavi_DEAD
AAA_16
T2SSE
Sigma54_activ_2
ABC_tran
cobW
TMEM247
Motif
Other DBs
NCBI-GeneID:
124825223
NCBI-ProteinID:
XP_047153751
LinkDB
All DBs
Position
Unknown
AA seq
1255 aa
AA seq
DB search
MTLEPEKPTSGGLYVPGKDRVVYVPQERKSRFGLDALASAKRSQYDGGFKLPKERTTSIA
ASAEDEDKSELSVVEESEQGGIVSRHRHTNRRYRDTTSETSLAESSVSEDHYGDTSKVRS
TEQAISNVSPSPSGYDREDHRSERRHSRDDSRSGSGRVRHQNYYERKAGSYSERDSHSRY
DRDHGRKRSRYEDSRRTSGRSDWDDGRWEWNETPRRDNVSSSRRHQPSPSPMFLGASPDA
RLVSPWLGGNTPHSSFNSSSPWDHVSPSPIPIRASGSSAKSSVSRHYGRSPQLNFRSETS
NSFQDEVADKSELGEEHKYEITESMRLEMEYDADRAWYDREEGSTLFEGDSSSLFLGDEA
SFQKKEADLAKRLVRRDGTKMSLAQSKKLSQLTADNAQWEDRQLLRSGAVRGTEVQTEFD
DEEEQKVILLVHDTKPPFLDGRVVFTKQAEPIMPIKDPTSDMAIISRKGSTLVREIHEKQ
SMNKSRQRFWELAGSKLGDILGVEKTAEQIDADTAEVGEDGEIDFKEEAKFSQHLKKDEA
VSDFAKSKTIAEQRQYLPIFSVREELLQVVRENQVVVVVGETGSGKTTQLTQYLHEDGYT
IGGIVGCTQPRRVAAMSVAKRVSEEMDTELGDKVGYAIRFEDVTGPSTIIKYMTDGVLLR
ETLKDSDLDKYRVIVMDEAHERSLNTDVLFGILKKVVAQRRDFKLIVTSATLNAQKFSNF
FGSVPIFHIPGRTFPVNILWSKTPVEDYVEGAVKQAMTIHITSPPGDILIFMTGQDEIEA
ACYALAERMEQMVSSSNKVVPKLLILPIYSQLPADLQAKIFQKAEDGARKCIVATNIAET
SLTVDGIFYVIDSGYGKMKVYNPRMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYT
ESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKVENLLDFDFMDPPPQDNILNSMYQLWVL
GALNNVGGLTDLGWKMVEFPLDPPLAKMLLTGELLGCLEEVLTIVSMLSVPSVFFRPKDR
AEESDAARERFFVPESDHLTLYNVYQQWKQHDYRGDWCNDHFLHVKGLRKAREVRSQLLD
ILKTLKIPLTSCWPDTDIVRKAICSAYFHNAARLKGVGEYVNCRNGMPCHLHPSSALYGM
GCTPEYVVYHELILTTKEYMQCATAVEPQWLAELGPMFFSVKESDTSLLEHKKRQKQEKT
AMEEEMENLKKVQAEFEKERKQKEKEKTAKHQQQISMPGLRKGSSTFLRPKKFGL
NT seq
3768 nt
NT seq
+upstream
nt +downstream
nt
atgacactggaaccagaaaagcctaccagtggtggactctatgttcctgggaaggatagg
gtggtttacgtgccacaagagagaaaatcacgttttggacttgatgccctcgccagtgcg
aaacggtctcagtatgacgggggattcaagttaccaaaagaaagaaccacctccattgca
gcttctgcagaagatgaagataagtctgagttgtctgttgttgaagaaagtgaacagggt
gggattgtcagtagacacagacacactaataggagatatcgtgacactaccagtgaaaca
tcacttgcagaaagttctgtgagcgaagatcactatggtgataccagcaaggttcgttca
actgagcaagcgatctcaaatgtttctccatcaccttctggatatgatagggaggatcac
aggagtgagaggaggcattccagggatgattcaagaagtggtagcggaagagtgcgtcat
cagaattactatgaacgtaaggcaggatcttattcagaaagggattcacatagtaggtat
gaccgtgatcatggtagaaagcgaagcagatacgaagattccaggaggacgtctggcagg
tctgactgggatgatggcaggtgggaatggaatgaaactccacgaagggacaatgtctct
agttctagacgtcatcaaccttcaccatcaccaatgtttttaggtgcctcaccagatgct
cgattggtttcaccatggttggggggcaacacacctcattcatcttttaattcatcttcc
ccctgggatcatgtttctccatctcctatccctatacgtgcttctggatcttcagccaaa
tcatctgtttctagacactatggaaggtcgcctcagcttaattttagatcggaaacttca
aattcatttcaggatgaagtggctgataagtctgaattgggtgaagagcacaagtatgag
attactgaaagcatgcgattggagatggaatacgatgctgaccgagcatggtatgacaga
gaggaaggtagcacattgtttgaaggcgacagctcatcactttttcttggagacgaagct
tcctttcagaaaaaagaggctgatctggccaagagactggttagaagagatggcaccaag
atgtcccttgcacagagcaagaagttgtcccagctcacagctgataatgctcaatgggag
gataggcaactgctgagatctggagctgttagaggtacagaggttcagactgaatttgat
gacgaggaagagcaaaaagttattctacttgttcatgatacaaagcctcctttccttgat
ggcagagttgtttttactaagcaggctgagccaattatgccaataaaagatccaacatct
gacatggctataatatctcgtaaagggtctactctggttagagaaatccacgagaagcag
agtatgaacaagtctcgccaacgcttttgggaacttgcaggctcaaaacttggtgacatc
ttgggtgttgagaaaacagcagagcagattgatgcagacactgctgaagtgggtgaagat
ggtgaaattgattttaaagaggaagctaagttttcacagcatttgaagaaagatgaagcc
gtgagtgactttgccaagtcaaaaaccattgcagagcaaagacaatatctgcctattttt
tcagtgagagaagagttattacaggtggttcgcgaaaatcaggtggtggttgtggttgga
gaaactggttcaggaaagacaacacaattaacacagtatctgcacgaggatggctatact
ataggtggtatagtgggctgcacccaaccaagacgtgtggcagctatgagtgttgccaag
agagttagtgaagagatggatacagagttgggtgataaagttggctatgctatacgtttt
gaagatgtgactgggccaagtactattataaagtacatgactgatggtgtacttctacga
gaaacactcaaagattctgatctagacaagtatagggttattgtcatggatgaagcccat
gaaagatcattgaacactgatgttctttttggaatattgaagaaagttgtagcccaacgc
cgtgatttcaagctgatcgtcacatctgcaactctgaatgcacagaaattttcaaatttc
tttggaagtgttccaatttttcacattcctgggcgaacatttcctgtgaatatattgtgg
agtaaaactccagttgaagattatgttgaaggtgcagtgaagcaggccatgactattcat
ataaccagtcctcctggtgacatccttatcttcatgactggtcaagatgagattgaggca
gcttgctatgcccttgcagaaagaatggagcaaatggtgtcatcttcaaataaagttgtt
cctaaactcttgattcttcccatatactctcagcttccggctgacttgcaagctaagata
tttcaaaaagctgaagatggagcccgaaaatgtattgtagccactaatattgccgagact
tcattaactgttgatggtatcttctatgtgatagactcaggctacggtaaaatgaaggtg
tataaccctaggatgggcatggacgctctccaggtcttccctgttagccgagctgctgct
gaccagcgtgctggtcgagctggtagaactggccctggtacatgctataggttgtatact
gagagtgcttacttgaatgaaatgctgcctagtcctgttccagagattcagaggactaac
ctcggtaatgtggtcttgttgctgaaatctcttaaagttgaaaatctacttgattttgat
ttcatggatccacctccgcaagataatattctcaattcgatgtaccagttgtgggttctg
ggtgcccttaacaatgttgggggtttaactgatcttgggtggaaaatggttgaattcccg
ctggaccctccactcgccaagatgcttttgacaggcgaactgttagggtgtcttgaggag
gttttgacaattgtgtccatgctttcagtgccctctgttttctttagacctaaggatcgg
gcagaggagagtgatgctgcacgggaaagattttttgtgccagagtccgatcatttaacc
ctgtacaatgtttatcagcaatggaaacagcatgattacagaggtgattggtgcaatgat
catttcttgcatgtcaaaggtctaagaaaggctagagaggtgagatcccagttgcttgac
attctgaagactttaaagatccccttaacctcttgttggcctgatacagacattgttaga
aaagcaatttgttctgcatattttcacaatgctgcaaggttaaagggcgtgggagagtat
gttaactgcaggaatgggatgccatgccatcttcatcccagtagtgctctctatggtatg
ggctgcactcctgagtatgtggtttatcatgagttaatcctgaccacgaaggagtacatg
cagtgtgccaccgcagtggagccccagtggctggctgagttgggacccatgtttttctct
gtgaaggagtctgatacatcattactggagcataagaagagacagaaacaagagaaaaca
gccatggaggaggagatggagaacttgaagaaggtgcaagcagagtttgagaaagaaagg
aaacagaaggagaaggaaaagacagctaagcatcagcagcaaatctccatgccaggttta
cgaaagggttcctccacattcttgagaccaaagaagtttggtttgtaa
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integrated database retrieval system
