Vigna umbellata (ricebean): 124825542
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Entry
124825542 CDS
T09662
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124825542
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vum03021
]
124825542
03019 Messenger RNA biogenesis [BR:
vum03019
]
124825542
Transcription machinery [BR:
vum03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124825542
Messenger RNA biogenesis [BR:
vum03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
124825542
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
zf-CCCH_2
zf-CCCH_3
Torus
Motif
Other DBs
NCBI-GeneID:
124825542
NCBI-ProteinID:
XP_047154132
LinkDB
All DBs
Position
Unknown
AA seq
698 aa
AA seq
DB search
MPMEDSEGVLSFDFEGGLDTAPSAAAAPSGPLVQHDSSAAASAVSNGGPPAPAPSAADPA
SVNVPGRRSFRQTVCRHWLRSLCMKGDACGFLHQYDKARMPVCRFFRLYGECREQDCVYK
HTNEDIKECNMYKLGFCPNGPDCRYRHAKSPGPPPPVEEVLQKIQHLYSYNYNSSNKFFQ
QRGSSYAQQAEKSQLPQGTNSTNQVVTGKPLPAESGNAQPQQQVQQSQQQVSQSQMQNVA
NGQPNQASRSATPLPQGISRYFIVKSCNRENLELSVQQGVWATQRSNESKLNEAFDSVEN
VILIFSVNRTRHFQGCAKMTSRIGGSVAGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKT
RHLRNPYNENLPVKISRDCQELEPSIGEQLASLLYLEPDGELMAVSVAAESKREEEKAKG
VNPDNGGENPDIVPFEDNEEEEEEESDEEEESFGHGVGPAGQGRGRGRGMMWPPHMPLGR
GARPIPGMQGFNPVMMGDGLSYGPVAPDGFGMPDLFGVGPRAFAPYGPRFSGDFGGPPAA
MMFRGRPSQPGMFPGGGFGMMMNPGRGPFMGGMGVAGANPPRGGRPVNMPPMFPPPPPLP
QNTNRLAKRDQRATDRNDRYGSGSEQGKSQDMLSQSGAPDDDTQYQQGYKANQDDHPAVN
NFRNDDSESEDEAPRRSRHGEGKKKRRGPEDVNTNYNH
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atgccaatggaggattccgagggagtcctcagcttcgatttcgagggtggcctcgacacc
gctccctccgccgccgccgctccctctggtccactcgtccaacatgactcctccgctgcc
gcttccgccgtttccaatggaggccctcccgccccggccccctccgcagccgaccccgca
tccgtcaacgttcccggccgacggagcttccggcagacggtatgccggcactggctgcgc
agcctgtgcatgaagggcgacgcgtgcgggtttctgcaccagtacgacaaggcgcggatg
cctgtttgtcgattcttcaggctctatggagagtgtcgggaacaggattgcgtgtataaa
cacacgaatgaagacatcaaggagtgtaacatgtacaagttgggattttgtcctaatggg
cctgattgccgatataggcatgcaaaatctcctggacctccacctcctgttgaagaggtc
cttcagaagatccaacatttatattcctacaattataattcatctaacaaatttttccaa
caaaggggttccagctatgcccaacaagctgaaaaatcccaacttcctcaaggaacaaac
tctacaaatcaagtggtgactggaaaaccattgccagcagagtcaggaaatgcccagcca
cagcaacaagttcaacagtctcagcagcaggtcagccagagccaaatgcaaaatgttgct
aatggccagcctaatcaagccagtagatctgctacccctttacctcaaggaatatctagg
tattttattgttaaaagttgcaatcgtgaaaatttggagttatctgtacaacaaggagta
tgggcaactcaaaggagcaatgagtccaaactaaatgaagcatttgactctgtggaaaat
gtgatattgattttctcagtcaaccgtactagacatttccagggttgtgcaaagatgaca
tccagaattggtggttctgttgctgggggtaactggaaatatgctcatggaactgcacat
tatgggcgaaacttctcagttaaatggttgaagttatgtgaattgtctttccacaaaact
cgccatttaaggaatccatacaatgagaacttaccagtgaagataagtagagattgtcaa
gagctggagccctctattggagagcaactggcatcattgctttatcttgagccagatggt
gaacttatggccgtttcagttgcagccgagtctaaacgggaagaagaaaaagcaaaggga
gtgaatccagataatggaggagaaaatccagatattgttccatttgaagacaatgaagaa
gaggaagaggaagaaagtgatgaagaggaggagagctttggtcatggtgtagggccagct
ggtcaaggcaggggtaggggcagaggtatgatgtggccacctcacatgccccttgggcgt
ggagcccgacccatacctggaatgcagggctttaaccctgtaatgatgggtgatgggtta
tcctatgggccagttgcacctgatggttttggtatgccagatctttttggtgtgggaccc
cgtgcttttgcaccatacggtcccaggttctctggtgattttggaggtcctccagcagcc
atgatgtttcgaggacgaccttctcaaccagggatgtttccaggtggtggttttgggatg
atgatgaatcctggacgtggtcccttcatgggggggatgggggttgcaggggcaaatccg
ccaagaggtggtaggccggttaatatgcctccaatgtttccaccacctccacccctacct
cagaacacaaaccgtcttgccaaaagagatcaaagagctactgatagaaatgataggtat
ggttctggatcagagcagggtaagagtcaagacatgctcagtcaaagtggtgcacctgat
gatgacacgcagtatcagcaaggatacaaagccaaccaggatgatcatcctgctgtcaac
aacttccggaatgatgacagtgaaagcgaggatgaagcacctaggaggtcaagacatgga
gaggggaaaaagaaaaggcggggcccagaagatgtcaatacaaactataatcattag
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integrated database retrieval system
