KEGG   Vigna umbellata (ricebean): 124826625
Entry
124826625         CDS       T09662                                 
Name
(RefSeq) histone deacetylase 6-like isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
vum  Vigna umbellata (ricebean)
Pathway
vum03082  ATP-dependent chromatin remodeling
vum03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:vum00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    124826625
   03083 Polycomb repressive complex
    124826625
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:vum03036]
    124826625
Enzymes [BR:vum01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     124826625
Chromosome and associated proteins [BR:vum03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     124826625
   HDAC complexes
    Sin3A-HDAC complex
     124826625
    BRAF-HDAC complex
     124826625
    REST complex
     124826625
    SHIP complex
     124826625
    MiDAC complex
     124826625
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     124826625
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    124826625
  Chromatin remodeling factors
   NuRD complex
    124826625
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 124826625
NCBI-ProteinID: XP_047155457
LinkDB
Position
Unknown
AA seq 464 aa
MARGERAETESGASLPSVGTDAMKRRVTYFYEPCIGDYYYGQGHPMKPHRIRMAHNLIVH
YGLHRRMQVNRPFPAAEADIGRFHSDDYVEFLACVSPQILSENSHSHYRQLKRFNVGEDC
PVFDGLFDFCRASAGGSIGAAVRLNRADADIAINWAGGLHHAKKAEASGFCYVNDIVLGI
LELLKVHRRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKFGDFFPGTGHIKDIGVGAGK
NYSLNVPLNDGLDDETFRSLFRPVIQKVMNVYQPDAVVLQCGADSLSGDRLGCFNLTVKG
HADCLRFLRSFNVPLMVLGGGGYTVRNVARCWCYETAVAVGVEPNPKLPYNEYYEYFGPD
YTLHPEPSNMENLNTPRDMEKIRNALLEQLSRLPHAPSVPFQTTPSIIQVPEEEEEHMDI
RPKRRIWSGEDFDSDNDDDMASSKNSVLTAQTSSRCGADGMDED
NT seq 1395 nt   +upstreamnt  +downstreamnt
atggcgagaggagagagagcagagacggagagtggcgcgtcgttaccgtctgtgggtacg
gacgccatgaagcggagagtcacgtatttctacgaaccctgcatcggcgactactactac
ggtcaaggacatccaatgaagccgcaccgcattcgcatggcccacaacctcatcgtccac
tacggtctccaccgtcgcatgcaggttaatcgtccctttccggcggcggaagcagacatc
ggccgtttccactccgatgactacgtcgagttccttgcctgtgtttcgccgcaaatccta
tccgagaattcccactcccactaccgccagctgaagcgcttcaacgtcggggaggactgc
cccgtcttcgacgggctcttcgacttctgccgcgcatccgccggtggctccattggcgcc
gccgtccgactcaaccgcgccgacgccgacatcgccatcaactgggccggcggcctgcat
cacgccaagaaggctgaggcctccggcttctgctacgtcaacgacattgttctcggcatt
cttgaacttctcaaagttcataggcgtgtgctgtatattgatattgatgttcaccatgga
gatggggtcgaggaggcattctacactactgatagggtcatgacagtgtcatttcacaag
tttggggattttttcccaggaactgggcacattaaagacattggggttggtgctggaaag
aattattctctaaatgtcccactcaatgatggattggatgatgagactttccgttctctg
tttcgccccgtcattcaaaaagtcatgaatgtttatcaaccggatgcagttgttcttcag
tgtggagctgattccttgtctggtgatcggttgggttgcttcaacttgactgtcaagggt
cacgcagattgccttcgattcctcagatcattcaatgttcctctaatggtgttgggtggg
ggaggatatacagttcggaatgttgcccgttgttggtgttatgagaccgcagtggcagta
ggagtggaacctaatccgaagttgccttacaatgaatattatgaatattttggtccagac
tatactcttcatcccgagccatccaacatggaaaacttaaacacacccagggatatggaa
aaaattcggaatgcattattggaacaactttccaggcttccccatgcacccagtgtgcct
tttcaaacaacaccatcaattatacaagttcctgaagaggaagaggagcacatggatata
agaccaaaacgtcgcatatggagtggtgaagattttgattctgataacgatgatgacatg
gctagttcaaagaactctgttttaactgcccaaacgagcagcaggtgtggtgcagatggg
atggacgaagattaa

DBGET integrated database retrieval system