Vigna umbellata (ricebean): 124828257
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Entry
124828257 CDS
T09662
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124828257
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vum03019
]
124828257
Enzymes [BR:
vum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124828257
Messenger RNA biogenesis [BR:
vum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
124828257
mRNA degradation factors
3'-5' decay
Ski complex
124828257
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Ski2_N
Helicase_C
DEXQc_Suv3
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
124828257
NCBI-ProteinID:
XP_047157470
LinkDB
All DBs
Position
Unknown
AA seq
820 aa
AA seq
DB search
MDPIYAANELAFRVGFSGHSGHLRLEPLTTPERHNPLRSIPDYIPPPAFPSETPESIKKY
IEETYLQPRLDPDEFSAEKVGRQWEFDWFDRAEVPLEPSLPRTMVIPVWEPPFRRSNNGS
VKGIWEPKFEEVDVSDLKLGETESGPLPRTSGKDFVRGSINNRPFRPGGLDDSRSVERIL
PEGASNGEWVREILNGGPAQTIPPSLKQGLDFGELKSHPCSWNVCKETNPLRSSSVEKLS
ELSVQFDDLFKKAWEEDADGEQEQDEVESVILEAEVGTAEVSSKPHDSEMSLDDILSVDS
EGPELHLDGFSDEIEQMKKEAWAMHESSDRIVDCFHELVPDMALEFPFELDAFQKEAIYY
LEKGESVFVAAHTSAGKTVVAEYAFALASKHCTRAVYTAPIKTISNQKYRDFCGKFDVGL
LTGDVSLRPEASCLIMTTEILRSMLYRGADIIRDIEWVIFDEVHYVNDVDRGVVWEEVII
MLPRHINIVLLSATVPNTIEFADWIGRTKQKEIRVTGTTKRPVPLEHCLYHSGELYKICE
SETFLPQGLKAAKEVSRKRNLTAGGASGPKVGISAGHENARGSKRENVSRMKQHGANFSG
TGRGYQNNSNGQSNWELRRADASMWLMLINKLSKKSLLPVVIFCFSKNRCDKSADSLTRT
DLTSSSEKSEIRLFCDKAFSRLKGSDKYLPQVVRVQNLLRRGIGVHHAGLLPIVKEVVEM
LFCRGVIKVLFSTETFAMGVNAPARTVVFDSLRKFDGKEFRQLLSGEYTQMAGRAGRRGL
DKIGTVILICRDELPEESDLXSWHSIFPYISLYFPIWFLI
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atggatccgatctatgcagccaacgagctcgctttccgggtcggattttccggccacagt
ggtcacctcagactggagccgctcaccacgccggagcgccacaacccgctccgttccatt
cccgattatattccgccacctgcctttcctagcgagacacctgaatctataaagaagtac
atagaagagacgtatctccagccaagattggatcctgatgaattttcggcagaaaaggtt
gggaggcagtgggagtttgactggtttgacagggctgaagttcctctcgagccatcactg
ccacgaactatggttattccagtttgggaaccaccatttcgacgttcaaacaatggatca
gttaaaggaatctgggaaccaaaatttgaggaggtggatgtatctgatctgaagttggga
gagaccgaatctgggccattaccacgcacttctggaaaggactttgtaaggggaagcatt
aacaatcgtcctttccgtccaggaggtttggatgattctagaagtgtagaaagaattctt
ccagaaggtgcttcaaatggtgaatgggtgcgtgaaattttgaatggtggtcctgctcag
acaattcctccaagcttaaagcaagggttggactttggcgagctcaagtcccatccatgc
tcatggaatgtctgcaaggaaaccaatcctctccggagttcatcagttgaaaaattgagt
gaattgtccgtacagtttgatgacttgtttaagaaggcttgggaagaagatgctgatgga
gaacaagagcaagatgaagtggagtctgttatattggaagctgaagttggtacagctgag
gtgtcaagtaaaccacatgatagtgaaatgtcacttgatgatattttgtcagttgactca
gaaggaccagaattgcatttggatggatttagtgatgaaattgaacagatgaagaaggaa
gcttgggctatgcatgagtccagtgatcgaattgtagattgctttcatgaacttgttcct
gacatggcactagagtttccatttgaactggacgcatttcagaaggaggctatttattat
cttgagaagggggagtctgtttttgttgctgctcacacatcagctggaaaaactgtagtt
gccgaatatgcatttgctttagcatcaaaacattgcactagagcagtgtatactgctcca
ataaaaacaatcagcaatcagaaatatagagatttctgtggaaagtttgatgttgggctt
cttactggggatgtaagcttgaggccagaggcttcttgtctcatcatgaccacagaaatt
ctaagatcaatgctctaccggggtgctgatataattcgggacatcgaatgggttatattt
gatgaggtgcactatgtcaatgatgtagatagaggagttgtttgggaagaagtaattatc
atgcttccaagacacatcaatatagtcctcctttctgccacggttcctaatactattgaa
tttgccgattggattggcaggacaaaacaaaaggaaataagggttacaggaacaacaaaa
agacctgtcccattggagcactgcctgtatcattctggagaactttacaaaatttgtgaa
agtgaaacatttctgcctcaggggttgaaagctgctaaagaagtttcaagaaaaaggaat
ttgactgctggtggtgcttcaggaccaaaggtgggtatttcagcaggtcatgaaaatgcc
agaggttcaaaacgtgaaaatgtatctcgcatgaagcagcatggagctaatttctctgga
actggtagaggctatcaaaataatagcaatggccagagcaattgggaattgaggagagca
gatgcttcaatgtggttgatgcttatcaacaagctctccaaaaagtcattattgcctgtg
gttatattttgtttttctaagaatcgctgtgataaatcagctgatagtttgactagaact
gacttaactagtagctcagagaaaagtgagatccgacttttctgtgacaaagcattttcg
cgactgaagggatctgacaaatatttaccacaggttgttcgagtacagaatcttcttcgc
agaggtattggtgtacatcatgctggccttcttccaattgtaaaggaagttgttgaaatg
ctcttttgccgaggggttatcaaggtcttgttttcaactgagacatttgcaatgggggtc
aatgcacctgctagaacagtagtttttgattctctaaggaagtttgatggcaaggaattt
aggcagctactatcaggagaatatactcaaatggctggtcgtgctggcagaagaggactt
gacaagattggtacagttattctgatatgtcgtgatgaactcccagaagagagtgattta
ntttcatggcactccatatttccttatatttccttatatttccctatctggttccttatt
taa
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