Vigna umbellata (ricebean): 124828699
Help
Entry
124828699 CDS
T09662
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20-like isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124828699
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vum03041
]
124828699
03009 Ribosome biogenesis [BR:
vum03009
]
124828699
Enzymes [BR:
vum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124828699
Spliceosome [BR:
vum03041
]
Complex A
U1 snRNP components
U1 related factors
124828699
Complex B
124828699
Ribosome biogenesis [BR:
vum03009
]
Eukaryotic type
Pre-60S particles
Helicases
124828699
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
PRAI
DUF58
Motif
Other DBs
NCBI-GeneID:
124828699
NCBI-ProteinID:
XP_047158014
LinkDB
All DBs
Position
Unknown
AA seq
573 aa
AA seq
DB search
MSYVPPHLRNNGSATVATARTPSVTLDNNNHHHNHNNHHKLAFTSNNNNNTNANGSPSLP
SFHNASRRSSAAPPSPRIFATPDPVFPQWQPSERASRMTPEQIEEVRSRLNLDVTVASDS
PPAPAPIESFTDMCLHSSIMKDIAYHEYTRPTSIQAQAMPIALSGRDLLGCAETGSGKTA
AFTIPMIQHCLAQPSIRRNDGPLALVLAPTRELAQQIEKEVKAFSRSLESLKTAIVVGGT
NIEKQRAELRAGIEIAVATPGRFIDHLQQGNTSLSRISFVVLDEADRMLDMGFEPQIREV
MRSLPEKHQTLLFSATMPVEIEALAKEYLASPVQVKVGKVSSPTTNVSQTLVKISENEKI
DRLLDLLVEDASQAEKCGHPFPLTIVFVERKTRCDEVAEALVAQGLSAVSLHGGRSQSER
EAALHDFRSGSTNILVATDVASRGLDVTGVSHVINLDLPKTMEDYVHRIGRTGRAGSTGL
ATSFYTDRDMFLVANIRKAIADAESGNTLTFATGKVARRKEKEAAAAQKEANIALSKQLG
LGAASINIEDKYKFMITAANIKREGAADSAWDD
NT seq
1722 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtatgtgcctccgcacctccgaaataacggctccgcgaccgtcgccaccgccaga
accccctccgtaaccctagacaacaacaaccaccaccacaaccataacaaccaccacaag
cttgcattcacctccaacaacaacaacaacaccaacgccaatggctctccctcgctcccc
tccttccacaatgcctctcgccggagctccgccgcacctccgtcgccgaggattttcgcc
acacctgaccccgtcttcccgcaatggcaaccctctgaacgcgcttcgcgtatgactccg
gagcagattgaagaggtccgttcccggcttaatcttgatgttactgttgcatctgattct
cctcctgcacctgcaccaatagaatcgtttactgatatgtgtttgcactcaagtatcatg
aaggacattgcttaccatgaatacaccaggccaacttcgatccaggcacaagccatgcca
attgctctcagtggaagggatttattgggttgtgctgaaactggtagtggaaagactgca
gctttcacaattcctatgatacagcattgcttggcccaaccttcaattcggcgcaatgat
ggtcctctggcattagttttggctcctaccagagaactagctcaacaaatagaaaaagag
gttaaagcttttagcagatcccttgagtcattaaaaactgctattgttgtgggcggaaca
aacattgaaaagcagagggcagaacttagagcagggattgaaatagcagttgccacgcct
ggaagattcattgatcacttgcaacaaggcaatacttccctctctagaatttcttttgtt
gttctagacgaagcagatagaatgctggatatgggttttgaaccacagataagagaggta
atgagaagtcttcctgagaagcatcaaacattgctttttagtgcaacaatgcctgtggag
attgaagcattagcaaaggagtacttggctagcccagtgcaagtgaaggtggggaaagtg
agtagcccaacaactaatgtttcacaaacgcttgtgaaaatttctgaaaacgagaagatt
gaccgacttctagacttacttgtagaggatgcatcacaggctgaaaaatgtggccatcca
tttccattaacaattgtgtttgttgagaggaagacaaggtgcgatgaagttgctgaagca
ttggtagctcaaggattatctgcagtttctcttcatggtggtcgcagtcagagtgaaaga
gaggctgccttgcatgattttcggagtggctctaccaacattttggttgccactgatgtt
gcatctcgtggcttggatgtcactggagtgtcccatgtcatcaatctagatcttcccaag
accatggaagattatgtacaccggattggaaggacggggcgtgcaggatcaactggatta
gctacttcattttacactgatcgtgacatgttccttgttgcaaatataaggaaggcaata
gctgacgccgaatctgggaacacgctgacatttgcaaccggaaaggttgctagacggaag
gagaaagaagctgcagctgcacaaaaagaggcaaatattgctttatccaaacagttagga
ttgggagctgcttcaattaacatcgaagataagtataaattcatgattactgccgcaaac
attaaaagagagggcgcagcagatagtgcctgggacgattaa
DBGET
integrated database retrieval system
