Vigna umbellata (ricebean): 124828986
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Entry
124828986 CDS
T09662
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03013
Nucleocytoplasmic transport
vum03015
mRNA surveillance pathway
vum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124828986
09122 Translation
03013 Nucleocytoplasmic transport
124828986
03015 mRNA surveillance pathway
124828986
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vum03019
]
124828986
03041 Spliceosome [BR:
vum03041
]
124828986
Enzymes [BR:
vum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
124828986
Messenger RNA biogenesis [BR:
vum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
124828986
Spliceosome [BR:
vum03041
]
Complex C
Other components
EJC/TREX
124828986
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
124828986
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Ribosomal_L26
Motif
Other DBs
NCBI-GeneID:
124828986
NCBI-ProteinID:
XP_047158349
LinkDB
All DBs
Position
Unknown
AA seq
463 aa
AA seq
DB search
MGDTKNEAYEEDLLDYEDEEEKEPEGANKVNGEAVKKGYVGIHSSGFRDFLLKPELLRAI
VDSGFEHPSEGNILNRNLLLENYYTLVNLSKVCFTYRWTSIFFGSPPVQHECIPQAILGM
DVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICNEFERFSTYLPDL
KVAVFYGGVNIKVHKDLLKNECPSIVVGTPGRILGLARDKDLSLKNVRHFILDECDKMLE
SLDMRKDVQAIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLV
QHYIKLKEEEKNRKLNDLLDALDFNQIVIFVKSVSRAAELDKLLRECNFPSICIHSGMSQ
EERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGT
KGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQIDTASYMPS
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgggggatacgaagaacgaggcgtacgaggaggaccttcttgactatgaagacgaagaa
gagaaggagcctgaaggtgctaataaagtcaacggtgaagctgtcaagaagggttatgtt
ggaattcacagttcaggattcagagattttttactgaagccagaacttcttcgggctata
gtggactctggatttgagcacccttctgaaggtaatattttaaatcgtaatcttcttttg
gagaactattatacgttggtaaatctctcaaaggtttgttttacttaccgttggacctct
attttctttggttcgccaccagtgcaacatgagtgtatacctcaagctatacttggaatg
gatgtgatttgtcaagctaaatctggaatgggaaaaactgctgtatttgttctatctacc
ctgcagcagattgaccctgttgccgggcaagtttctgcacttgtcttatgtcatacaagg
gaattagcataccagatatgcaacgaatttgaaaggtttagcacctacctacccgatcta
aaggttgctgtcttttatggtggcgtcaacataaaagttcacaaggatctattgaagaac
gaatgccctagtattgttgttggtacacctggaagaatacttggattggctagggataag
gacctttctttgaagaatgttagacatttcattttagatgaatgtgataagatgctagaa
tctctggacatgagaaaagatgtgcaagctattttcaagatgacaccccatgataagcaa
gttatgatgttttctgcaacgctcagcaaggaaatacgtcctgtctgcaaaaaatttatg
caagatccaatggaaatttatgttgatgacgaagcaaagttgacccttcatggacttgtg
cagcactacatcaaattgaaagaggaggagaagaacaggaagttgaacgaccttcttgat
gcattggacttcaatcaaattgttatctttgtgaaaagtgttagtagagcagcggagctg
gacaaactgcttagagaatgcaacttcccatctatttgcattcattctggaatgtctcaa
gaagaaaggttaaaacgatataaaggttttaaggagggtcatacaagaattctagttgca
acagatttggttggtaggggtatcgatatcgaacgtgtgaatatagttataaactatgac
atgccggattctgctgatacgtacttgcacagggttggccgcgctggacgatttggaacc
aagggccttgcaattacatttgtttcatgttccactgatgttgatgttctcaacaatgtt
caatccaggtttgaagttgatataaagcagcttcctgagcagattgatacagctagctac
atgccatcctag
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