Vigna umbellata (ricebean): 124829061
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Entry
124829061 CDS
T09662
Name
(RefSeq) zinc finger CCCH domain-containing protein 41
KO
K13192
RNA-binding protein 26
Organism
vum
Vigna umbellata (ricebean)
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
vum01009
]
124829061
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vum03019
]
124829061
03041 Spliceosome [BR:
vum03041
]
124829061
Protein phosphatases and associated proteins [BR:
vum01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
124829061
Messenger RNA biogenesis [BR:
vum03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
124829061
Spliceosome [BR:
vum03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
124829061
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
RRM_Nup35
zf_CCCH_4
RNA_bind
zf-CCCH
Motif
Other DBs
NCBI-GeneID:
124829061
NCBI-ProteinID:
XP_047158462
LinkDB
All DBs
Position
Unknown
AA seq
921 aa
AA seq
DB search
MELKVSSPKPESVAPSDCVSEPEEKEVSEDDDDDRNHKHRRREARSQSLERDVSDPVINR
PFKKRNKTFGNRHPFRVNESQAFETLKTYSDATSDKDIYFKFDRRRPGLTSVPRPPLEMS
QRLRGNPSFPGDPGVGRGRGRESGFWNQRESRFGSMDVASQMVPQGSIPPSLYAGRGIPN
VSNAQNASWNTFGLIPAVPNGGLDMLHPMGLQGTLRPPINSSLNVNISRQRCRDFEERGF
CLRGDMCPMEHGVNRIVIEDVQSLSQFNLPVSLPSAHLIGAPAGSESLHSVNASTTSMNN
KCLPGKVSKSVVNDDGLTLDGAFTGPAGCTSGADLYDPDQPLWNDSGLEPSNALLTLQSS
KNEETEPILNDAPDGDCPVGAARTSISSQGASSSVWARIGSSKNRFDIKEKTNTAMGSFH
YPENQLKEDNDELVGAHNASFQVKQNIADDADPKALDVSLKAQTDNMRTIRKSSQKALRT
LFVNGIPHKSNKREALLAHFKKFGEVIDIYIPLNSERAFVQFSKREEAEAALKAPDAVMG
NRFIKLWWANRDSIRSDSTNTGNGMIVTPRGQAPAFVPSHPVVTDRGKDIHQADASKTTY
EVSSPTDQSKPVITDGLKVPPPLQKKLVNLENLKEELRKKQEMLDQKRNEFKRQLNKFEK
QASGLKGELSNEQAAKRLKLGTASDVAKLASPPQSSDTEGGMTSPHTEAAADKNKQLVNT
VPQSPKTSTAARLQEPTGLKHPIQPLMPLNRYKLDNRPAAFRIIPPLPAGLTNVEVLKEH
FSPFGELSSVELEDVQTNDSIQQEAHITFTTRWAAERAFINGKCWNEQNLKFMWLTPSIS
SNATGGRERSQSAPKEPLDSDDYSKEKLGNSVNQEVIESDGENRNSETRNGLEHVEMEPN
EDPQSTTKVSSPKQSPEGSVC
NT seq
2766 nt
NT seq
+upstream
nt +downstream
nt
atggagctgaaagtttcgtctcccaaacctgagtctgttgcaccatctgattgtgtcagt
gagccagaggaaaaggaagtgagtgaagacgatgatgatgatcgtaatcataagcatcga
aggagggaagctcgctctcaatctttggagagagatgtttcagatcctgttattaatagg
ccattcaaaaagcgtaacaaaacttttggtaataggcatcccttcagggtaaatgaatca
caagcctttgaaacactgaaaacttacagcgatgccacctcagataaagatatatacttc
aagtttgatagaaggcgccctggcttgacttcagttcctcgaccacctctggaaatgagt
caaagactacgtggaaacccatcttttcctggagatcctggtgttggcaggggaagaggc
agggaatctggtttttggaatcaacgtgaatctaggtttggctcaatggatgttgcttca
caaatggttccacaagggtccattccaccaagcctttatgctggacgtgggatacccaat
gtttcaaatgcacaaaatgcatcgtggaatacatttggcttaattccagctgtgcccaat
ggtggtctagatatgcttcatccaatgggtttacagggaacgctcagaccacctattaat
tcttctttgaatgtgaatatttctcgccaacggtgtagagattttgaggagcgtggattt
tgccttagaggggacatgtgtcctatggaacacggtgttaatcggattgtcattgaagat
gttcagagtctttcacagtttaaccttcctgtttcacttccaagtgcacacttaattgga
gcacctgctggatctgaatctttacattctgtaaatgcttctaccacttcgatgaacaac
aaatgtttacctggaaaagtttctaagtctgtagtcaatgatgatggtttgacattggat
ggggcttttactggtcctgctggttgcacaagtggagctgatctttatgatcctgatcaa
ccactttggaatgatagtggtctggagccttcaaatgccctcctaacccttcagtcatct
aagaatgaggaaactgagcccatattgaatgatgctccagatggtgattgtcctgttgga
gctgccagaacatctatcagttcacagggtgccagttcatctgtctgggccagaattggt
agttcaaaaaacagatttgacataaaagaaaaaactaacactgcaatgggttcctttcat
tatcctgagaatcaattaaaggaagataacgatgaattagttggtgctcacaatgcttct
tttcaagtaaagcaaaatatagcagatgatgcagacccaaaagccttggatgtctctttg
aaagcacaaactgataatatgcgtactatacgaaagtcatcacaaaaggcattgcgtact
ctatttgtaaatggaatacctcataaaagtaacaagagagaggcacttctagctcatttt
aagaagtttggggaagttattgacatttatattccattgaacagtgaacgagcttttgtg
caattctctaagagggaagaggctgaagcagctttgaaggcaccggatgctgtaatgggt
aatcgttttatcaagctatggtgggctaatcgtgatagcattcgcagtgatagtaccaac
actgggaatggcatgattgtaactccccgtgggcaggcacctgcttttgttccatctcat
cctgttgtcactgataggggaaaagacatccatcaagctgatgcttcaaagactacatat
gaagtatcatcacccactgatcaatctaagcctgtcatcactgatggactcaaggttccg
cctcctttgcagaagaagcttgtaaacttggagaatctaaaggaagaactgcgcaagaag
caggaaatgctagatcagaagcgcaatgaattcaagcgccagttgaacaaatttgagaaa
caagcttctggactcaagggtgaattgtctaatgagcaagctgccaagagactcaaatta
ggcacagcgtctgatgttgccaaactggcttctcctcctcaatcatcggatactgaaggt
ggtatgacatccccacacacagaggcagcagctgataagaataaacagctggtcaatact
gtaccccaaagtcctaaaacaagtacagcagcaagactgcaagaacctacaggcttgaag
cacccaattcaaccattaatgcctctaaatagatacaaattggacaatcgtcctgctgca
tttcgtatcatcccacctttgccagctggtctaactaatgttgaagttttgaaggagcac
ttctcaccttttggcgaactttcctccgtagagctagaagacgtgcaaacaaatgatagt
atccaacaagaggctcatataactttcactactcgttgggcagctgagagggcatttatt
aatggtaaatgttggaatgaacagaatctgaaattcatgtggttgacaccatctatttct
agtaatgcgaccggtggtagagaacgatctcaatctgctcccaaggagcccttagattca
gatgactattctaaagaaaaattaggaaactctgtgaaccaagaagtgattgaatcagat
ggcgagaatagaaattctgaaactagaaatggtttggagcatgtggaaatggaaccaaat
gaagatccccagtctaccacaaaagtttcttctcccaaacagtcacccgaggggagtgtc
tgttaa
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