Vigna umbellata (ricebean): 124829279
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Entry
124829279 CDS
T09662
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124829279
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vum03021
]
124829279
03019 Messenger RNA biogenesis [BR:
vum03019
]
124829279
Transcription machinery [BR:
vum03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124829279
Messenger RNA biogenesis [BR:
vum03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
124829279
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf_PCFS4
CID
zf-met
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
124829279
NCBI-ProteinID:
XP_047158707
LinkDB
All DBs
Position
Unknown
AA seq
1021 aa
AA seq
DB search
MNMESTRRSLDRSRELGSKKPRLIDELSARQLPQRQQGSGTVTSLVSARARVNDRDTESS
ESSRGGGYQPQPQPHHELVTQYKTALAELTFNSKPIITNLTIIAGENQSAAKAIAATVCA
NILEVPSDQKLPSLYLLDSIVKNIGRDYIKYFAVRLPEVFCKAYRQVDPIVHSSMKHLFG
TWKGVFPPQCLQMIEKELGFTPAVNGSASVSATVRSDLQSQRPPHSIHVNPKYLERQRLQ
QSSTSKGVVDDMTGALLKSNEDSERPNRALGASRPWLDPRINMLNNQHTQRDAFNDSVSE
KSIDGSFGGSQYGSGISSNLVSGAGRTGTKLIDLGQEKTWSKTDGGDAETISGQKNGFSL
KRSLSNREAPKSINLKAHRQPGLNLTQIWNNMMSDNWKNSEEEEFTWDEMNSGLTDHGPN
VSSNLSTDSWMTDDENLEGEDHLHILHPYGEKVDREISTVKKQLPGFGGHPPSSWQLQKH
HTIDKLTLKPGYSEGFVSTISGLPANASSLPVKKGNQSLTSKAIVGMSKIVEQQFDSGET
ESPSGQSPSQRQSPSLPGTVYHPHSMQNLPEQEMPQDHKTSQFLGGPTGQHIRDRSPTLH
PVVQVGNMRRTQEKDMQGTFQPKLQSLQPDSAQAEVFAKTKLPQSKVSLTKGVSEQSTKN
NLSAAAVKSGIIPKKSITSNLDPRKHLSKSGVQLPPSGRSSPATLTSSGSAVVSPALLDP
LHKDSSSLPKKPQGKIGQPPQRLNTQPPASSNVNAAKNNVNPIANLLSSLVAKGLISAET
ESPTVVPSEVLKGSKDKTANISTNSSFPVTSVSDSAAVPASSARDEEDASTKSSLPSAQS
TSTKIRNLIGFDFKPNVIREFHEPVIRELLDDFSHHCKICSIRFKQEQQYKRHLEWHATR
EHDPIKVSRSWYAKSSDWIAGKVEYSSELEFTDSVVVHDKETDSSQLDTMIRADENQCLC
VLCGELFEDVYCHERNEWMFKGAVYMNCLDFNDEMESRNVGPIIHAKCLSENSIVTNLGN
D
NT seq
3066 nt
NT seq
+upstream
nt +downstream
nt
atgaacatggagagtacgcgcagatcgttggatagatctagagaactgggttccaagaag
cctcgattgatcgacgaactcagcgctagacagttacctcaaagacagcaagggtccggg
acagttacttccttggtgtctgcaagggctcgagtaaatgacagggacaccgaaagcagc
gaatcaagtcgcggcggtgggtaccagcctcagccacagcctcaccatgagcttgtgact
cagtataagactgcgcttgctgaacttactttcaattccaagcccataattacaaacttg
actattattgctggggagaatcagtctgctgccaaggcaattgccgccactgtctgtgct
aacattctagaggttccaagtgatcaaaaactgccgtctctttatctcttagacagtatt
gttaagaacatcgggcgagattatataaagtattttgctgtcagattacctgaggtattc
tgcaaggcttacagacaggttgatcctattgtccattcaagtatgaaacatctttttgga
acttggaaaggagtctttcctcctcagtgccttcagatgattgagaaagaacttggcttt
acacctgcagtcaatggttcagcttcagtatctgctacagtcaggagtgatttgcagtca
caacgcccacctcatagtatccatgtgaatccaaagtatttagaaaggcagcgtctccag
cagtcaagtacgagtaaaggagttgttgatgacatgaccggagctttattaaagtcaaat
gaggattcagagaggccaaatagagctttgggtgcttctcgaccatggctggatcctagg
attaacatgcttaataatcagcacacacagagagatgcatttaatgattctgtttctgag
aagagcattgatggatcatttggaggcagtcaatatggttctggcatttctagtaatttg
gtctcaggtgctggaagaactggaactaagctcattgatttagggcaagaaaaaacatgg
tccaaaacagatggtggtgatgcagagaccatatctgggcaaaaaaatggtttcagtctc
aagcgtagtctttcaaatcgtgaagcaccaaagtccataaatttgaaagcacatcgtcag
ccaggcctaaatttaactcagatatggaacaatatgatgtcagataactggaaaaattct
gaagaggaggagttcacgtgggatgagatgaactctggtttgactgatcatggacctaat
gtgtctagcaatttgagcacagattcatggatgacagatgatgaaaatttggaaggtgaa
gatcacctgcatattctacacccttacggggaaaaggttgatagggaaatatccactgtt
aagaaacaactgcctggttttggtggccatccaccttcatcatggcaattgcagaagcat
cacacaattgataagttgactctgaagccaggttactcagaaggatttgtgtccactatt
agtggcttaccagccaacgcaagttctttacctgtcaagaaggggaaccaatctcttacg
tcaaaggcaatagtaggaatgtccaaaattgtagagcaacaatttgattctggggagacc
gaatccccttctgggcagtcaccttcacaacgacagtctccatcactaccaggaacagta
taccaccctcattcaatgcaaaatttgcctgagcaagaaatgccccaggatcacaaaaca
tctcaatttttgggaggtccaactggtcagcacattagagatcgctcacctacccttcat
cccgtcgttcaggttggtaacatgcgaagaacacaggaaaaggacatgcagggcacgttt
caaccaaagcttcagtcactgcagcccgactctgctcaggctgaagtttttgctaaaact
aagctgccccagtctaaagtttctttaaccaaaggagtttcagaacagtcgaccaaaaat
aatttgtcagctgcagctgtgaagagtggaatcattcccaagaaatcaattaccagtaat
ctggatccaaggaagcatctatccaagtctggggttcagcttcctccttctggtaggtct
tctcctgccacattaacttcttcagggtctgcagtggtatcaccagctttattggatcct
ctgcacaaagattcatcttcactgcccaaaaaacctcaaggaaagattggacaaccacca
caaaggcttaatactcaaccacctgcttcctctaatgtgaatgctgcaaaaaataatgta
aaccctatcgcaaaccttttaagctcattggttgcaaagggtttgatatctgcagaaact
gaatcgccgactgtggtaccaagcgaggtgctgaagggatccaaagataaaactgcaaac
attagcaccaatagttctttcccagttacatcagtttctgattctgcagctgtcccagca
tcatctgccagagatgaggaagacgcttctacaaaatcctctctaccctcagctcaatca
actagcacgaaaatcagaaatctcattggctttgattttaaacctaatgtaattcgagaa
ttccatgaaccggtaattagggaattattggatgatttctctcatcattgcaaaatttgc
agtattaggtttaaacaagaacagcagtataagagacacttggagtggcatgccacaaga
gaacatgatccaattaaagtatccagaagttggtatgctaagtcaagtgattggattgct
ggcaaggtagaatactcatctgagcttgagtttaccgactctgttgttgtacacgacaaa
gaaacagacagcagtcaattggatacgatgattcgagcagatgaaaatcagtgtttgtgt
gtactgtgtggcgagctatttgaagatgtgtactgtcacgaaaggaacgagtggatgttc
aaaggggcagtttacatgaactgcttggatttcaatgacgagatggaaagtagaaatgtg
ggtcccatcattcatgccaaatgcctatcagagaattcaattgtcaccaatttgggtaat
gattaa
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integrated database retrieval system
