Vigna umbellata (ricebean): 124829654
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Entry
124829654 CDS
T09662
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124829654
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vum03041
]
124829654
Spliceosome [BR:
vum03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
124829654
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
Beta-prop_EML_2
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
WDR55
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
PRP4
ANAPC4_WD40
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_WDR19_1st
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
WD40_RFWD3
WD_LRWD1
Beta-prop_SCAP
Beta-prop_Vps41
eIF2A
Beta-prop_Nup120_160
WD40_like
Motif
Other DBs
NCBI-GeneID:
124829654
NCBI-ProteinID:
XP_047159165
LinkDB
All DBs
Position
Unknown
AA seq
446 aa
AA seq
DB search
MQELMMKRRAAALAVPTNDMAVRARLRHLGEPITLFGEREMERRDRLRMIMAKLDAEGQL
EKLMKAHEDEEAAASAPKDEAEEALQYPFYTEGSKALLDARIYIAKYSLARAALRIQRAQ
RRRDDPDEDMDAEIDWALRQAGNLSLEFSEIGDDRPLSGCSFSRDGKWLATCSLTGASKL
WNMPKIKKHSTLKGHTERATDVAFSPVHDHLATASADRTAKYWNDQGSLLKTFEGHLDRL
ARIAFHPSGKYLGTASFDKTWRLWDIETGEELLLQEGHSRSVYGLAFHRDGSLAASCGLD
SLARVWDLRTGRSILALEGHVKPVLGISFSPNGYHLATGGEDNTCRIWDLRKKKSFYTIP
AHSNLISQVKFEPQEGYFLVTASYDMTAKVWSGRDFKPVKTLSGHEAKVTSVDVLGDGGH
IVTVSHDRTIKLWSSNTTNEQAMDVD
NT seq
1341 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaactcatgatgaagaggcgggcagctgctcttgccgttcctacaaatgatatg
gctgtgcgagctcggcttcgacatcttggtgagccaataactctgtttggtgagagagag
atggagagacgggacaggttgcggatgattatggcgaagctagatgcagaaggtcagctg
gagaagctgatgaaagctcatgaggatgaagaggctgcggcttctgctccaaaagacgag
gctgaggaagcactgcagtatcctttttacactgaagggtcaaaggctctcctggatgcc
agaatttatattgctaaatattctttggcaagggcagcattacggattcaacgtgcacag
agaagaagggatgatccagatgaagatatggatgcagagatagattgggcattgaggcag
gctgggaatttgagtctcgaattcagtgaaattggagatgatcggcctctttctggttgc
tccttctcaagggatggaaaatggcttgccacctgttctctgactggcgcttccaagttg
tggaacatgcccaaaataaaaaaacattccaccttgaaggggcacacagaacgtgctaca
gatgttgctttttctcctgttcatgatcatttagcaactgcctctgctgatcgaacagca
aagtattggaatgatcaaggatcacttttgaagacatttgagggtcatctggaccgtctt
gcccgcattgccttccatccatcagggaagtacctgggaactgccagttttgacaagaca
tggagattatgggacatagaaacaggggaggagttgcttcttcaagaaggacatagtaga
agtgtgtatggcctggctttccaccgcgatggatcattagctgcatcttgtggactagac
tctctggctcgtgtttgggacctccgaactggaagaagtattcttgcactggaaggtcat
gtcaaaccggttcttggcatcagtttttcacctaatggatatcatctagccactggtggt
gaagacaacacgtgtcggatttgggatttgaggaagaagaaatccttttatactattcct
gctcactcgaatttaatatcacaagttaaatttgaaccacaagaaggttactttttggta
actgcttcatatgacatgactgctaaggtttggtctggccgtgactttaagcctgtgaag
acactatctgggcatgaagcaaaagttacctctgtggatgttcttggagatggtggccac
attgttaccgtctcccatgatcgcaccataaaactgtggtccagcaatacgactaacgaa
caagcaatggatgttgattaa
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