Vigna umbellata (ricebean): 124830416
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Entry
124830416 CDS
T09662
Name
(RefSeq) LOW QUALITY PROTEIN: DNA damage-binding protein 1
KO
K12830
splicing factor 3B subunit 3
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124830416
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vum03021
]
124830416
03041 Spliceosome [BR:
vum03041
]
124830416
03036 Chromosome and associated proteins [BR:
vum03036
]
124830416
Transcription machinery [BR:
vum03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
124830416
Spliceosome [BR:
vum03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
124830416
Complex B
124830416
Complex C
U2 SnRNP specific factors
124830416
Chromosome and associated proteins [BR:
vum03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
124830416
TFTC complex
124830416
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
Beta-prop_RSE1_1st
CPSF_A
Motif
Other DBs
NCBI-GeneID:
124830416
NCBI-ProteinID:
XP_047160075
LinkDB
All DBs
Position
Unknown
AA seq
1366 aa
AA seq
DB search
MAVSEEECSSAKSGPSSSSSASRYYLSKCVLRGSVVLQVLYAHIRSPSSNDIIFGKETSI
ELVVIEDDGNVQSVCDQPVFGTIKDLAILPWNEKFRARDPQLWGKDLLVATSDSGKLSLL
TFCNEMHRFVSVTHIQMSIPGNPLDLPGRRLAVDSSGCFIASSAYEDRLVMFSMSMSSGD
IIDERILYPSESEGTASSSRSIQRTSMRGTIWSICFISQDSRQPSKEHNPVLAVIINRRG
ALQNELLLLEWNVEAHKIFVISQYAEAGPLAYDIAEVPNSGGLAFLFRTGDVLLMDLRDP
RNPFCVYKTNLNILPNAMEEQTYVDDSCKLHDVDDERFNVAACALLELSDYDPMSIDSDS
GGANSGYKYICSWSWAPENNRDPRMIFCVDTGEFFMIEVLFDSEGPKVNLSECLYKGLPC
KALLWVEGGYVAALVEMGDGVVLKLEDGRLCYTNPIQNIAPILDMAVVDYRDEKHDQMFA
CCGVAPEGSLRIIRNGINVENLHRTASIYQGVTGTWTVRMKITDSHHSFLVLSFVEETRI
LSVGLSFTDVTDSVGFEPNVCTLACGLVTDGVLVQIHHCTVKLCLPTKAAHSEGIPLPSP
ISTSWXPDNVSISLGAVGHNFIVVSTSNPCFLFILGVRLLSAYQYEIYEMQHLVLQNELS
CISIPGQEIEQKPSNSSISANNSNISSFQSGVDISKTFVIGTHRPSVEIWFFAPGGGITV
VACGTISLTNTIGTAISGCVPQDVRLVFVDKYYVLAGLRNGMLLRFEWPVEPCPSSPINM
VDTALSSINLVNSASNVLGKRNDPPSTLQLIAIRRIGITPVFLVPLGDTLDADIIALSDR
PWLLHSARHSLSYTSISFQPSTHVTPVCSVECPKGILFVAENCLHLVEMVHSKRLNMQKF
HLEGTPRKVLYHDESKMLLVMRTDLNCGTCLSDICCVDPLSGSVVSTFRLELGETGKCME
LIRVGSEQVLVVGTSLSSGPAIMPSGEAESCKGRLLVLCLVHAQNSDSGSMTFCSKGGSS
SQKTSPFHEIVSYAPEQLSSSSLGSSPDDNSSDGIKLDENEVWQFRLAYATKWQGVVFKI
CPYLDRYFLASAGNAFYVCGFPNDNPQRVRRYAMGRTHHMITSLSAHFTRIAVGDCRDGI
ILFSYHEEARKLEQLCCDPSRRLVADCILMDADTAVVSDRKGGIAILCSNHLEDNASTEC
NMTLSCAYFMAEIALSVQKGSYSYRLPADDVLQGGNGPKTNVDSLQNTIIASTLLGSIMI
FIPLSREEYELLEAVQERLVVHQLTAPVLGNDHNEFRRREIRGGVPKILDGDVLTQFLEL
TSMQQKMILSSEPPDIAKPSLKPLLPPNVSVNQVVQLLERVHYALN
NT seq
4101 nt
NT seq
+upstream
nt +downstream
nt
atggcggtttccgaagaggaatgctcttcagcgaagtctggtccttcttcttcttcctcc
gcctcgcgctactacctctccaaatgcgtcctcagaggaagcgtcgttcttcaggtcctc
tacgctcacattcgttctccctcctctaatgacatcatttttggcaaggagacgtctatt
gaattggtggttattgaggatgatgggaatgtgcaatctgtgtgtgatcagcccgtcttt
ggcaccatcaaagatcttgccatattgccttggaacgagaagtttcgtgcacgtgatcct
cagctgtggggtaaagaccttttggttgctacatccgattctgggaagctgtcgttgctc
acgttttgcaatgaaatgcacaggtttgtttctgtaacacatatacagatgtctattcct
ggaaacccattggatcttcctggaagaaggttagccgttgattccagtggttgttttatt
gcttctagtgcatacgaagatcggctggttatgttttctatgtcgatgtccagtggtgat
atcattgatgagagaattctatatccttcggaaagtgaaggaactgcaagctcttccaga
agcatccaaagaaccagtatgcgtggtaccatttggagcatctgcttcatttcacaagat
tccagacaaccaagcaaagagcataatcctgtacttgctgttattataaataggagggga
gcccttcaaaatgaattgctattattggaatggaatgttgaagcacacaaaatatttgtt
atttctcagtatgctgaagctgggcctctggcatatgacattgctgaagttcctaactcc
gggggacttgcattcctgttcaggactggtgatgttctcttaatggatcttagagatccc
cgcaacccattctgtgtctataagactaacttgaacattttgccaaatgccatggaagag
cagacttatgtggatgactcctgtaaattacacgatgttgacgatgaacgctttaatgtt
gctgcctgtgctttgttggaactgagcgattatgatcctatgtccatagacagtgacagt
ggtggtgctaattcaggctacaaatacatatgctcatggagttgggcacctgaaaataat
agagatcctaggatgatcttctgtgtagatactggggaattttttatgattgaagttctt
tttgattctgaaggccctaaagttaatctgtctgagtgtctctataaaggtctgccgtgt
aaagcacttttgtgggttgaaggtggatatgtagctgcccttgtggaaatgggggatggt
gtggttctgaaattggaagacggaaggctatgctatacaaaccctattcaaaacattgca
ccaatcttggatatggcagttgtagattatcgtgatgagaagcatgatcaaatgtttgct
tgctgtggtgtggctccagaggggtcattaaggataattcgaaatggtattaatgtggaa
aatctacacaggactgcttctatatatcaaggggtaactggtacttggactgtcagaatg
aaaattactgattcacatcattcttttctagttctatcgtttgttgaggaaaccagaata
ttgtcagttgggttaagttttactgatgtgactgattcagttggtttcgaacctaatgtc
tgtactctggcatgtggccttgtgactgatggtgtacttgttcagatccaccactgtact
gttaagctttgtttgcccactaaagcagctcattctgaaggtatccctttgccctctcct
atttccacatcttggnttccagacaatgtgagtatcagtttgggggcagttgggcataat
ttcatagttgtgtcaacctctaacccatgctttttgtttatccttggggttagattgcta
tcagcttatcaatatgaaatttatgaaatgcaacatttggtactgcagaatgaattatca
tgcatttccatccctggacaagaaattgagcaaaaaccatcaaattcatccatttcagca
aataatagtaacatctcttctttccaaagtggagtggacatcagtaaaacctttgttatt
ggtacacacaggccctctgtggaaatttggttttttgcaccaggtggaggaattacagta
gtggcttgtgggacaatttcattgactaatacaatagggactgccatcagtggttgtgta
cctcaagatgtacgacttgtatttgttgataagtattatgttcttgctggattgaggaat
ggaatgcttctccgctttgagtggccggtggaaccatgtccatcatcaccaataaatatg
gtggatactgctttatcttctataaatttggtcaattctgcaagcaatgttttaggcaag
agaaacgaccctccttcaacacttcaattgattgccattcgacgcattggcattactcca
gttttcttggtgccactaggtgacacactggatgctgatataattgctcttagtgatagg
ccttggttgttgcatagtgcaagacatagcctttcgtatacttctatctcatttcaacct
tccacacatgtgactcctgtttgctctgttgagtgtccaaaaggaatattgtttgttgca
gaaaactgtttacatctggtggagatggttcacagcaagagacttaatatgcagaagttt
catttagagggcactcctaggaaggtcctgtatcacgatgaaagcaaaatgttgctagtg
atgaggactgacctgaattgtggtacatgtctgtctgacatatgttgtgtggatccccta
agtggatcagtagtgtcgacttttagacttgaacttggtgaaacaggaaagtgcatggaa
ttaataagagttggaagtgagcaagtgcttgttgttggaactagtctgtcttctggtcca
gccataatgcccagtggtgaagctgaaagttgcaagggtcgtcttcttgttctttgtctt
gttcatgcgcaaaattcagatagtggttcaatgacattctgttcaaagggagggtcatca
tctcaaaaaacttcgccattccatgaaatcgtttcatatgctcctgaacagttatcaagc
agcagcctgggcagcagtcctgatgataatagttctgatggcatcaaacttgatgaaaat
gaagtatggcagttccgattggcttatgcaacaaaatggcagggggtggtttttaaaatc
tgtccttatcttgatcgttacttcttggcatctgctggcaatgctttctatgtttgtggt
ttccctaatgacaatcctcaaagagtgagaaggtatgctatgggaaggacgcaccacatg
ataacatctttgagtgcacattttacaagaattgcagttggtgattgtcgtgatggaatc
attttattttcttatcatgaggaagctagaaaattggagcaactttgctgtgatccatca
cgaaggttagttgctgattgcattttgatggatgctgatacagctgttgtttcggatcga
aaaggaggcattgctattttatgttcaaatcatttggaagataatgcaagtactgaatgc
aacatgacactaagctgtgcttatttcatggctgagattgccttgagcgtccagaagggc
tcatattcatacagacttccagctgatgatgttttgcaaggcggcaatggccccaagaca
aatgttgattcactacaaaatactattattgccagtaccctgttaggaagcataatgatc
ttcatccctttatcaagggaagaatatgagttattagaagctgtgcaagaaagactcgtt
gtccaccagttgaccgcacctgttctaggaaatgatcataacgagtttcgccgtcgtgaa
attcgaggtggagtacccaagatacttgatggtgacgtgttaacccagtttctggagctg
acaagtatgcagcaaaagatgattttgtcttccgagccacctgatatagcaaaaccaagt
ttgaagccactcctaccccccaatgtttctgtaaatcaggtggttcaacttcttgaacga
gtccattatgctctgaactaa
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integrated database retrieval system
