Vigna umbellata (ricebean): 124831295
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Entry
124831295 CDS
T09662
Name
(RefSeq) THO complex subunit 5A-like isoform X1
KO
K13174
THO complex subunit 5
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124831295
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vum03019
]
124831295
03041 Spliceosome [BR:
vum03041
]
124831295
Messenger RNA biogenesis [BR:
vum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
124831295
Spliceosome [BR:
vum03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
124831295
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FmiP_Thoc5
RWD
Motif
Other DBs
NCBI-GeneID:
124831295
NCBI-ProteinID:
XP_047161190
LinkDB
All DBs
Position
Unknown
AA seq
804 aa
AA seq
DB search
MEDGEIEEGSIGGVEEEEHSSEPHKSEESPYEILRNSKASVENIVADILSIKKDRKPKQH
LRDLATQMFLHFITLRQANRSILLEEDRVKTETERAKAPVDFTTLQLHNLMYEKNHYVKA
IKACKDFKSKYPDIDLVPEEEFFRDAPQDIKDSVLSNDAAHNLMLRRLNFELFQRKELCK
HHEKLELQKKILLQTIANRKKFLTSLPSHLKSLKKASLPVQNQLGLHHTKRLKQHHSAEL
LPPALYVIYSQLLAQKEAFGEPIDLEIIGSLKDAQAFARQQAHKDNDNSTTVESSKLEDD
APDEEEDGQRRRKRPRRVQAKESLDQGGIFQVHPLKIIIHVYEDQHSDSKSSKLTLRFEY
LVKLNVVCVGIEGSNESPENDILCNLFPNDTGLELPQQSAKLFVQEAIAFNTLRTSRPYK
WAQHLAGIEFLPEVSPLLFTDDNGAAKNENVISGLSLYRQQNRISTVLQRIRDRRKAQLA
LLEQLESLAKLDWPRLSCRSIPWAFHTPLCNLDSWSPVRLPPVPRESSSPTVIDEEEHVQ
EPMDADVNERSDVTKAEPESITEDGELPTLLPNMSKLDHSTQLNLISKSILPPLNKIRSQ
SFKKFDDSSDFLLDTESDLDEPAQTELEHDNTLSNYHDRNSVSWMDHGLKEFCLVLCRKI
SADENNVNLEAKIKISMEYPLRPPLFALSVRCISSGQKSDKLGLEWYNELRAMEAEVNLH
ILRMLPVNQQNYVLAHQVSCLAMLFDYYLDEAFPSSERTNCTSVVDVGLCKPVTGRFLGR
CFRGRDRRKMISWKDMKLNFSCPQ
NT seq
2415 nt
NT seq
+upstream
nt +downstream
nt
atggaagacggtgagatagaagagggatcaataggtggtgtagaggaagaggagcattcc
tcagagcctcacaagtcggaggaatcgccctacgaaatcttgcgcaacagcaaggcttcc
gtagagaacatcgtcgccgacatactctccattaaaaaagaccgaaaacctaaacaacat
cttcgggatctcgctactcagatgtttttacacttcatcactcttcgccaggcaaatcgc
tctatcttgctagaggaagaccgcgtcaaaaccgaaacggagcgtgccaaggcgccggtg
gatttcactacgctgcagcttcacaacctcatgtacgagaaaaaccactatgttaaggcg
ataaaggcctgcaaagacttcaaatcgaaatatcctgacattgaccttgttccggaggag
gagtttttccgcgacgctccacaagatatcaaggactccgttttgtcgaacgacgctgcg
cacaatctcatgctccggaggctcaatttcgagctattccagcgtaaagaactctgcaaa
catcatgagaagctggaactgcagaagaaaatcctcttgcagactattgcaaaccgaaag
aaattcctgacaagtctcccatcacatctcaaatctcttaagaaggcctccttgcctgta
caaaaccagctcgggcttcatcatactaagagattaaagcagcatcattctgcagagtta
cttcctccagccctatacgtgatttactcacagttgttggctcaaaaggaggcctttgga
gaacccattgatctggagattataggaagcctgaaagatgctcaagcttttgctcgtcaa
caggctcacaaggacaatgacaattccactacagtggagagttccaaattggaagacgat
gctcctgatgaagaagaagatggtcagagacggaggaaaaggccacggagggttcaagca
aaggagagccttgaccaggggggaatatttcaagttcacccacttaaaatcattatccat
gtgtacgaagatcagcattctgattcaaaatcttccaaacttaccttaaggtttgagtat
ttggtgaagttgaacgttgtatgtgttggaatagaaggttctaatgaaagtccggagaat
gatatattatgtaatttattccctaatgatacgggacttgagcttccccagcagtctgcc
aaactctttgttcaagaggctatagcattcaatactctaagaacttcacgtccttacaaa
tgggctcagcacttggcggggattgaattcttgcctgaggtgtctcccttactttttact
gacgacaatggagcagcgaagaatgaaaatgttatatctggtctttcactatatcgccag
cagaaccgaatatcgacagttctgcagagaattcgcgatagaagaaaagctcaattggct
cttctggaacagctagaatctctcgcaaagcttgactggcctcgtttgtcctgcagaagt
attccttgggcttttcacactccgttgtgcaatttggatagttggtcaccagtaagactt
ccacctgtacctagagagtcctcatctcctactgtcatcgatgaagaggagcatgtacag
gaaccaatggatgctgatgttaatgaacgttctgatgtcacaaaagcagaacctgagagt
attacagaagatggggagcttccaactttgcttcctaacatgtccaagcttgaccattcc
acacagctgaacttaatttctaaaagtatccttcctccactcaataaaatcaggtcacag
agtttcaaaaagtttgatgacagttctgatttcttgctggatactgaaagtgatctagat
gaaccagcgcagactgaactagaacatgataatacattatccaattaccatgacagaaat
tctgtatcatggatggatcatggactcaaggaattttgtttggttctttgcagaaaaatc
agtgcagatgagaacaatgtgaatttagaagctaagataaagatcagtatggaatatcct
ctaaggcctcctctttttgcattgagcgttcgctgtatatcttctgggcaaaagagtgat
aagttaggattagagtggtataatgaactccgtgcaatggaagcagaggtcaatctacac
atactgaggatgctacctgtcaatcaacaaaattatgtactggctcatcaagttagttgt
cttgctatgttgttcgactattatttggatgaggcattcccatcgtctgaaaggacaaat
tgtacttccgtggttgatgttggtttatgtaagcctgttactggtcgattcctgggtaga
tgttttagaggaagggatcgcaggaagatgatctcctggaaagacatgaaactcaatttc
agctgtccccaatag
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integrated database retrieval system
