Vigna umbellata (ricebean): 124831396
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Entry
124831396 CDS
T09662
Name
(RefSeq) pre-mRNA-processing protein 40A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124831396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
vum03041
]
124831396
Spliceosome [BR:
vum03041
]
Complex A
U1 snRNP components
U1 related factors
124831396
Complex B
124831396
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
Borrelia_P83
WW_2
SMODS
DUF2981
Motif
Other DBs
NCBI-GeneID:
124831396
NCBI-ProteinID:
XP_047161327
LinkDB
All DBs
Position
Unknown
AA seq
1020 aa
AA seq
DB search
MSNNPQFPGLQPLRPPISGSVDPPRNYAPPMPVQFRPVVPAQQPQQFISIPSQHYQHHQH
QPVGPGGVPMIGVGMPPQNQQPQFSQPIQQLPPRPSPQLPPPSQAIPMPVARPNLHIPSE
SMMPQPDSQAPNGYTPGVVGPGMTLSSSYTFAAPTYGQVQTNFNSTGQFQPVPQVHALTG
SSSQSITTGTTLQSNGGGQPLVPTVMPSATIVPPQLAKNGSTDWIEHTTATGRTFYYNKK
TKVSSWEKPFELMTPIERVDESTNWKEYISPDGRKYFYNKVTKESKWLIPEELKLAREQV
EKAIASGPHSEALLNSHTQPSPAPSVAEATLNADNISVSSQGEPSSPVSVAPVVTTSTST
VQPEMPSGPSTSPSSTPITGTKVDELEAPVNTVTPSDTSMGGDKAVDTDVSTAITPTNDT
NNDSNQDALGSADGVPAEEKEDGKTDSIGERSNHVAAETKAVEPETLVFANKMEAKDAFK
ALLDSANVGSDWTWDRAMRLIINDKRYGALKTLGERKQAFNEYLNHRKKHEAEEKRMKQK
KAREDFKKMLEESTDLTSSTRWSKAVSIFENDERFKAVERDRDRRDMFESFLEELVNKER
ARVQEERKRNIMEYKKFLESCDFIKASTQWRKVQDRLEADERCSCLEKIDRLEIFQDYLR
DLEKEEEEQKKIQKEELRKTERKNRDEFRKLMEEHIASGILTAKTHWRDYYTKVKDLHAY
IAVASNTSGSTPKDLYEDVAEELDKQYHEEKSRIKDAMKLAKITLFSTWTFEDFKSALSK
DIGTSPISDFNLKLVFEELLERVKEKEEKEAKKRKRLADDFFHLLYSIKDITVSSNWEDS
IPLVEDSQEFRSIGDESLCKEVFEEYIAQLKEEAKESERIRKEERMKKEKDREERERRKG
KQRREKDGGRERGKDEAHKKDKADSDSMELSEIQSSKENKRSEDDSRKQRKQRHSPEHEM
DKEKTKKSHGHGSDRKKSKRRASGHESDEGRHKKHKRDHRREGDHGDLEDGEFGDGVDRW
NT seq
3063 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaataatccgcaatttccaggtttacagcctcttcggcctcctatttccggttca
gtggatcctccccgcaattatgctccacctatgcctgttcagttccgacccgttgttcct
gctcagcagccacaacagttcatttccataccttctcaacattaccagcatcaccaacat
caacctgttggtcctggtggtgttcccatgattggtgttggcatgcctcctcaaaatcaa
cagccccaattttctcaaccaattcaacagttacccccaagacctagtccgcagttgcca
cccccatcgcaggcaattccaatgccggttgctcgcccaaatctgcacatcccatctgaa
tcaatgatgcctcaacctgattctcaagctccaaatggttacacaccaggtgtagttggt
ccgggaatgacactctcttcatcatatacgtttgcagcacctacttatggtcaagtgcag
acaaattttaattctaccgggcaatttcaacctgttcctcaagtccatgctctcacgggc
tcttcatcccagagcattaccacagggacaactcttcagagcaacggtggaggacagcct
ttagttccaactgtcatgccttcggctaccattgtcccgccacagctagctaagaatggc
tccacagattggattgagcataccactgctactggaagaacattttattacaataagaaa
actaaagtatctagttgggagaagccttttgaattgatgacgcctattgagagagtggat
gaatcaacgaactggaaggagtatattagtcccgatggacgaaagtatttctacaacaag
gtcacaaaggaatctaagtggttaattcccgaggaactgaagttggcccgtgagcaagtt
gaaaaagcaattgccagtggaccacattctgaagcattactgaattctcatactcaaccc
tctccggcaccttctgtggcagaagcaacactaaatgcagataatatatctgtaagcagt
caaggggaaccttcaagtcctgtttcagttgctccagttgttactacgtccacaagtact
gtacaacctgagatgccttctggaccatctacgtctccttcttcaacccctataactgga
acaaaagtggatgaactcgaggcacctgtaaatactgtcacaccgtcagataccagtatg
ggaggtgataaagctgttgatacggatgttagcactgctataactccaacgaacgacact
aacaatgattcaaatcaagatgctctaggttctgccgatggagttcctgctgaagagaaa
gaagatggtaaaacggattcaataggggagagaagtaatcacgtggctgcagaaacaaag
gcagttgagccagaaacccttgtttttgcaaataagatggaggccaaagatgctttcaaa
gcactcttggattctgcaaatgttggatctgactggacttgggatcgggctatgcgttta
ataattaatgataaaaggtatggtgcgttaaaaacactcggcgaaaggaagcaagctttc
aatgagtacttaaatcataggaaaaaacatgaagctgaggaaaagcgaatgaaacaaaaa
aaagcacgggaggattttaaaaaaatgttagaagaatccacggacttgacttcatccact
agatggagcaaagccgtgtctatatttgaaaacgatgaacgtttcaaggctgttgaacgt
gacagagatcgtagggatatgtttgaaagcttcttggaggaacttgtaaacaaggaacga
gcaagggtacaggaggaacgaaagcgaaatataatggaatacaaaaagtttttggaatct
tgtgactttataaaggctagtacacagtggagaaaagttcaagatcgcctagaggctgat
gaaagatgttcttgtcttgaaaaaattgatcgcttggagatattccaggattatttacgt
gatttagaaaaggaagaggaagagcagaagaagattcaaaaggaagaattgagaaagaca
gaacgtaaaaaccgtgatgaattccgcaaattgatggaagagcatatcgcctcaggcatc
cttacagcaaaaactcactggcgtgattattatacaaaggtgaaagatttacatgcctac
atagcagtggcatcaaacacatcgggttcaactcctaaagacttgtatgaagatgttgct
gaagagctagataaacaatatcatgaagaaaaaagtcgaataaaagatgcaatgaaattg
gcaaagatcaccttattctcaacctggacgtttgaagacttcaaatcagctttatcaaaa
gacattggtacttctccaatatctgacttcaatttaaagcttgtgtttgaagagctacta
gaacgggtgaaagagaaggaggagaaggaagctaagaagcgcaaacgtcttgccgatgat
ttctttcatctgctatattctatcaaggacattactgtgtcttcaaattgggaggactca
ataccacttgttgaagatagccaggagttcaggtctattggagatgaaagcctttgcaag
gaagtatttgaggagtacattgcacaacttaaagaagaggcaaaggaaagtgagcggata
cggaaggaggaaaggatgaagaaggaaaaagacagggaggaaagagagagaaggaaaggg
aagcaaagacgggagaaagatggagggcgtgaaagagggaaagatgaggcacacaagaag
gataaagcagacagtgacagtatggagttatctgaaatccaatcatccaaagaaaacaaa
aggtctgaagatgatagtagaaaacaaaggaagcagcgtcatagtcccgagcacgaaatg
gataaagagaagactaagaaatctcacggtcatggtagtgaccgaaagaagtcaaagcgc
cgtgcatctggccatgaatcagatgaaggacgccacaaaaaacacaagagagaccaccgc
agagaaggtgatcatggagatcttgaagatggggaatttggagatggtgtggatagatgg
tag
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