Vigna umbellata (ricebean): 124831616
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Entry
124831616 CDS
T09662
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
124831616
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vum03019
]
124831616
03041 Spliceosome [BR:
vum03041
]
124831616
Messenger RNA biogenesis [BR:
vum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
124831616
Spliceosome [BR:
vum03041
]
Complex B
Other components
Prp19-related factors
124831616
Complex C
124831616
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_15
TPR_19
TPR_8
NRDE-2
ARM_TT21
ARM_TT21_C
UTP6_C
Motif
Other DBs
NCBI-GeneID:
124831616
NCBI-ProteinID:
XP_047161622
LinkDB
All DBs
Position
Unknown
AA seq
917 aa
AA seq
DB search
MAIAQDLYPSEDDLLYEEELLRNPFSLKLWWRYLIARSEAPFKKRFVIYERALKALPGSY
KLWYAYLRERLDLVRNLPVTHSQYDTLNNTFERALVTMHKMPRIWIMYLQTLTNQKLVTR
TRRTFDRALCALPVTQHDRIWEPYLVFVSQKGIPIETSLRVYRRYLKYDPSHIEDFIEFL
LNSSLWQEASERLASVLNDDQFYSIKGKTKHRLWLELCDLLTRHANEVSGLNVDPIIRGG
IRKFTDEVGRLWTSLAEYYIRRGLHEKARDVFEEGMSTVITVRDFSVIFDSYSQFEESML
AYKMEEMGLSDEEDDEGEENGFEEVEEEDIRVKGRLVEEDFERKILHGFWLNDKNDIDLR
LARFDYLMERRPELANSVLLRQNPHNVEQWHRRVKLFEGNPTKQILTYTEAVRTIDPMKA
VGKPHTLWVAFAKLYEQHKDLANARVIYDKAVQVNYKTVDNLASVWCEWAEMELKHKNFK
GALELMRRATAEPSVEVKRKVAADGNEPVQMKLHKSLRLWTFYVDLEESLGSLESTCAVY
ERILDLRIATPQIIINYAYFLEEHKYFEDAFKVYERGVKIFKYPHVKDIWITYLSKFVKR
YGKNKLERARELFENAVESAPADQVKPLYLQYAKLEEDYGLAKRAMKVYDQATKAVPNNE
KLSMYEIYISRAAEIFGVPKTREIYEQAIESGLPDKDVKTMCLKYAELEKSLGEIDRARA
VYVFASQYADPRSDPEFWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYLM
QKDQTVNLDEAKDKLKQAGIPEDEMAALERQLAPAADNTVTKDRKVGFVSAGVESQSDGG
IKTNSNHEDIELPEESDSDDDDDKIEIAQKDVPSAVFGGLIRKRDEDEKNGEVDAAKDKD
NENRLGALERIKRLKRN
NT seq
2754 nt
NT seq
+upstream
nt +downstream
nt
atggcgatagcgcaagatttgtatccctcagaagacgaccttttgtacgaagaggagttg
cttcgaaaccctttcagccttaagctatggtggcgttacctaattgcgcgttcggaagct
ccgttcaagaagcgcttcgtgatttacgagcgggcactgaaagcgcttcccggaagctac
aagctgtggtacgcgtacctccgcgagcgcctcgacctcgttcgcaacctccccgtcact
cactctcaatacgatacgctcaataataccttcgagcgtgcattagtcaccatgcacaag
atgccgcgaatttggattatgtatctgcaaaccctaaccaatcagaaattggttactcga
actcgcaggaccttcgacagggctctctgcgccctccccgtcacccagcacgaccgtatc
tgggaaccttatcttgtgttcgttagccagaagggtattccaattgagacttctcttcgg
gtttatcgcaggtatttgaagtatgatccttctcacattgaggattttattgaatttttg
cttaattcgagtctctggcaagaggcttctgagaggctggcttcggtcctcaatgatgac
cagttttactccattaagggtaagaccaagcaccggctttggttggagttatgtgatttg
ctcactcgccatgccaatgaggtttctgggttgaatgtggaccctatcattaggggtggg
attaggaagttcactgatgaggtgggtaggctttggacttcgcttgccgagtattacatt
aggaggggtttgcatgagaaggctagggatgtgtttgaggagggtatgtctactgttatc
acggtcagggattttagtgttatatttgattcttactcgcagtttgaagagagcatgctt
gcttacaagatggaggagatggggttgagtgatgaagaagatgatgagggtgaggaaaat
ggctttgaggaagtggaagaagaggatattcgtgtcaaaggaagattggtggaggaggat
tttgagaggaagattttgcatgggttttggttgaatgacaagaatgacatagacttgagg
ttagctcggtttgattaccttatggagaggaggccggaattggctaacagtgtgcttttg
cgtcaaaatcctcataatgtagaacagtggcacaggagggtaaagctctttgaagggaat
cctaccaagcagatactgacttacactgaagcggtgaggacgattgatcccatgaaggca
gtgggaaagcctcacactttgtgggttgcgtttgctaaactgtatgaacagcacaaagat
cttgccaatgcccgtgtcatatatgacaaggcagtgcaggtgaactacaaaactgtggat
aacctggctagtgtctggtgtgagtgggctgaaatggagttaaagcataaaaatttcaaa
ggagcacttgagctgatgaggcgggctacagctgagccgtcagttgaggtgaagcgaaaa
gtggctgcggatgggaatgaaccagtccagatgaagctacacaaatccttgagattgtgg
acattctatgttgatttggaggaaagtctaggttctttggaatctacatgtgctgtttat
gagcgaattttggatttacgaatagccacaccgcaaataataatcaattatgcatacttt
ttggaggaacataagtactttgaagatgcttttaaagtttatgaaagaggagtaaagatc
tttaagtaccctcatgttaaagacatatggattacttatctctctaaatttgtgaagaga
tatggaaagaataaattggagcgagcaagagaattatttgaaaatgcagttgaatcggct
ccagctgatcaagtgaagccactttacctgcaatatgccaagctggaggaggactatggt
ctagctaagcgagctatgaaggtttatgatcaagcaactaaggctgttcctaacaatgag
aagttaagcatgtatgagatatacatttctcgtgcagctgagatatttggtgtgcccaaa
acaagagagatctatgagcaggcaattgaatctggtctcccagataaggatgtcaaaacc
atgtgtttgaagtatgctgaactggagaaaagcttgggagaaattgaccgggcccgtgca
gtatatgtatttgcatctcagtatgcagatccacgatctgatccagagttttggaataag
tggcatgagtttgaggttcagcatgggaatgaagatactttcagagaaatgcttcgtatt
aagcgaagcgtctctgcaagctacagccagacacattttatactgcccgagtatctaatg
cagaaggatcaaactgtgaatctcgatgaagccaaagacaagttaaaacaggctgggatc
cctgaggacgaaatggctgctttagaaaggcaattagcaccagcagctgacaatactgtg
acaaaagatagaaaagttggatttgtgagtgctggagtggaatctcaatctgatggaggg
ataaaaactaattcaaatcacgaggatattgagttaccagaagaaagtgattctgatgat
gatgatgataagattgaaattgcacaaaaagatgttccttctgctgtgtttggtggtttg
attagaaagagagacgaggatgaaaagaatggagaggtagatgcggcaaaagataaggat
aatgaaaatcggcttggtgctcttgagagaataaagaggctaaaacgaaattaa
DBGET
integrated database retrieval system
