Vigna umbellata (ricebean): 124831858
Help
Entry
124831858 CDS
T09662
Name
(RefSeq) LOW QUALITY PROTEIN: uncharacterized protein LOC124831858
KO
K06100
symplekin
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124831858
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
vum03021
]
124831858
03019 Messenger RNA biogenesis [BR:
vum03019
]
124831858
Transcription machinery [BR:
vum03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
124831858
Messenger RNA biogenesis [BR:
vum03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
124831858
U7-dependent histone pre-mRNA processing factors
124831858
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
124831858
NCBI-ProteinID:
XP_047161906
LinkDB
All DBs
Position
Unknown
AA seq
1338 aa
AA seq
DB search
MAAPTKDQVLSLLATANNHGDLAVKTSSLKQAKDLLLSIDPSLAAELFPYLLELQSSPES
LVRKLLIQIIEEIGFRAVEHSPTLISVLLTFLRDSDVIVVKQSIVSGTNIFGSVFEELIV
QFQQNGKVERWLEDTWISMLKFKDAVFGIAVEPGSVGIKLLALKFLEMFVLLFASDISDS
EKLATKGGRQAFNVLWLVGGHPHPVLDPVVLMSEGNRTLGILLNLLQSVGTLPGCLTITV
VNCLAAIARKRPQHYDTILLALLEFDPNVQTAKGCHVASIQYSLRTAFLGFLRCTYSPIL
ESRERLTRSLRAMNAGDAADQVLRQVDKMIKNGDRPTRDARVNKDEQPSIQSSVSGELSR
KRPVPLDNEQMTNGHETISKRIRSGADSQSTLPAKINDPGQDPNSVNGVSPNVPLLDSEM
TAVEQMIAVIGALLAEGERGAESLEILISKIHPDLLADIVITNMKHLPKTPPPLSRIGNL
PATRXLNSQVSQSHVIATSVPINSVQSVSGTGQAVLPSTTATVIGTSSLPSDTSIFSDLP
ADSKRDPRRDPRRLDPRRVVVAPGGATVSVTDDNGATKIEFDEPVSSIKPVSLPVVTADD
NTPSDLTVKIKNDDMISKGAADQVTPKTEVQERPGDIHQIAEADTSFGPSVSTTDLREED
PSSVNMSDEIEAIGTDSSSISEFDQFSLDVQVEPTLEDTCLELPQLPPYVELSKEQRRIV
KNMAVRHIIDSYKHLHGTYCQQFWMPLLARLVAQIDDDEEFILMLQKHILEDHWIKGHEL
VLHVLYHLHSLMIFDSVENASSSAVLYEKFLLGVAKTLLDSFPASDKSFSRLLGEVPLLP
ESSLKILNDVCYSDIIGHDGKVIRDIERVTQGLGAIWSLILGRPQNRQACLGIALKCAVH
PQDEIRAKAIRLVTNKLFQLSYISGDVEKFATKMLLSAVEHEVSDTGLLQPGPGPTEHRA
EAEVHCYFSCVPLSTISEDESARMAKPLIQNVPSISFSEAQRLISLFFALCTKKPSLLQI
VFNVYGQTPKIVKQAFHRHIPIVVRALGQSYSELLRIISDPPQGSENLLTLVLQILTQDT
SPSSDLISTVKRLYETKFRDVTILVPLLSSLSKQEVLPIFPRLVGLPLEKFQRALAHILQ
GSAHTGPALTPVEVLVAMHGIVPEKDGLALKKITDACSACFEQRTVFTQQVLAKALNQMV
DQTPLPLLFMRTVIQAIDAFPALVDFVMEILSKLVTRQVWRMPKLWVGFLKCVYQTQPRS
FHVLLQLPPQQLESALNRHANLRGPLASYASQPTIKSTLSRSILAVLGLANETHVQQNLS
TSLHPSDTSSSVHGATLT
NT seq
4017 nt
NT seq
+upstream
nt +downstream
nt
atggccgctcctaccaaggaccaagtcctctctcttctcgctacggccaacaaccacggc
gaccttgccgttaaaacctcgtcgctcaaacaagcaaaggaccttcttctctccatcgac
ccctctctcgccgccgaactcttcccttacttgcttgagcttcagtcttctcccgaaagc
ctcgttcgcaaattgctcattcagataatcgaggagattggttttagagcagttgagcac
tctcctacgctgatatctgtactattaacatttttacgagacagtgatgtaattgttgta
aagcagtctattgttagtggcacaaatatctttggtagtgtttttgaggagttgattgtg
cagtttcaacaaaatggtaaagttgagaggtggctagaagatacttggatctcaatgctt
aagttcaaggatgctgtttttgggattgctgtggagcctggttctgttggaataaagttg
ctggcactgaaattccttgaaatgtttgtattactatttgcatctgacatcagtgattct
gagaaattagccacaaaaggaggtagacaagcttttaatgtgttgtggttggttggtggt
catcctcaccctgttcttgatccagtggtgctcatgtcagaaggaaataggactcttggc
attctattaaatttattgcagtctgttggcactcttcctggttgcttgactattactgtt
gtaaattgtttagcagccattgcaagaaaaaggccacagcactatgatactattctttta
gcattgcttgaatttgatccaaatgttcaaacagcgaagggatgtcacgttgctagtatt
cagtactccttaagaacagcttttctgggatttcttaggtgcacttattcaccaatacta
gagtcaagagaaagactaacaaggagcctgcgagctatgaatgcaggggatgctgcagat
caggtgcttaggcaagttgacaaaatgattaaaaatggtgatcgtcctactcgtgatgca
cgagttaacaaggatgaacaaccatcaattcagtcatctgtttcaggggaattatctaga
aaaagacctgttcctctagataatgaacaaatgaccaatggtcatgaaaccatatctaaa
cggattcgttctggtgctgactctcagtctactttaccagctaaaataaatgatcctgga
caagatcctaactctgttaatggagtatcacctaatgttcctttgctagatagtgaaatg
actgctgtagagcaaatgattgctgtgattggtgctttacttgctgaaggagagagaggt
gccgaatctcttgagatcctcatttcaaagattcatcctgatctactggctgatattgtc
ataactaatatgaagcatttgcctaagactcccccaccattgtcaaggattgggaattta
ccagcaacacgataattaaactcccaagtcagtcaatcacatgttatagcaacttctgtt
ccaataaattctgtccaatccgtgtctggtactggccaagctgtgttgccttcaactacg
gccactgttattggcactagttcattgccgtctgacacttctatcttcagtgacctgcct
gctgattctaaacgtgatcctcggcgggatccccgtcgccttgatccccggcgtgttgtg
gtagctcctggaggagcaactgtatcagttacagatgataatggggccacaaaaattgag
tttgatgaacctgtttcttcaattaaacctgtttcacttcctgtcgttactgctgatgac
aatactccatcagatttaacagtcaaaataaaaaacgatgatatgatctctaaaggtgca
gctgatcaggtaactcctaaaacagaggttcaggaaaggcctggagatattcatcagatt
gcagaagcagatacttcctttggtccttcagtctcaaccactgatttaagagaggaggat
ccgagttcagtgaatatgtcagatgaaattgaagcaattggtacagattcatcatctatt
tcagagtttgatcagttttctcttgatgttcaagttgaacccacattggaagatacctgt
ctggagttaccacagcttccaccttatgttgaactatccaaagaacagcgacgtatagtg
aaaaacatggctgttaggcacataatcgattcatacaaacatttacatggaacatattgt
cagcagttttggatgccactacttgctcgactagttgctcagattgatgatgacgaagag
tttattttgatgctgcaaaaacacatcttggaagaccactggataaagggacatgaactt
gtactgcatgttttgtaccatctgcactccctgatgatattcgattcagttgaaaatgct
tcatcttctgctgttttatatgaaaaatttctcttgggagtggccaaaactttattggac
tcttttccagcttcagacaagtcttttagtagacttcttggtgaagttccacttttgcct
gagtcgtccttgaagattttgaatgatgtctgctattctgatattattggtcatgatgga
aaagttatccgtgacattgaacgtgtgactcaaggccttggtgctatctggagtttaatt
ttggggcgtccacaaaatcgccaagcctgcttgggaatagcattgaagtgtgctgtccac
ccacaggatgagattcgagctaaagctattcggctggttacaaacaagctctttcagctt
agttacatatcaggagatgttgaaaagtttgcaacaaagatgctgctttctgctgtagaa
catgaagtttcagatacgggtcttttgcaacctggacctggacctactgaacatagagct
gaggcagaggtgcattgctatttttcttgtgtccctttatctacaatttctgaagatgaa
tctgctagaatggctaaaccattgattcaaaatgttccatctatatcattttctgaagct
caacgtctcatttctttgttttttgccttatgtactaagaaacccagtcttcttcagatt
gtatttaatgtgtacgggcaaaccccgaaaattgttaaacaggcttttcatcgccacatt
cctattgttgtcagggcactggggcaatcttattctgaactgctccgtatcatatctgat
ccacctcaaggaagtgaaaatcttctgacactggtactgcaaatattgactcaggacacg
tcgccatcttctgatttaatatctacggttaaacgtttgtatgaaacaaaatttagagat
gttacaattcttgttccattattgtcttcgctttccaaacaggaggttttaccaatattc
ccaaggcttgttggtcttccattggaaaagtttcaaagagcacttgctcacatactacag
ggttcagctcatacaggtccagctttaactcctgtagaagtgttggttgcaatgcatgga
attgttccggagaaggatggccttgcacttaagaagataacagatgcttgctcggcttgt
tttgagcaacgtactgtgttcacacaacaggttctagcaaaggcattgaaccaaatggtt
gatcaaactcctctgcctctacttttcatgagaacagttattcaggcaattgatgctttt
cctgcactggttgattttgttatggagatactctcaaaacttgtgacaagacaggtgtgg
cgtatgcctaaactttgggttggtttcttaaaatgtgtatatcagacacagccacgttct
tttcatgttctattgcagttgccacctcaacaacttgaaagtgcactcaacaggcatgct
aatctcagaggtccccttgcttcatatgccagtcaaccaactataaaatcaacacttagt
agatcaattttagcagttcttggtcttgcaaatgaaactcatgtgcagcaaaatttgtca
acttcgttgcacccttctgacacaagttcatcagttcatggagcaacacttacgtga
DBGET
integrated database retrieval system
