Vigna umbellata (ricebean): 124831869
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Entry
124831869 CDS
T09662
Name
(RefSeq) regulator of nonsense transcripts UPF2 isoform X1
KO
K14327
regulator of nonsense transcripts 2
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03013
Nucleocytoplasmic transport
vum03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
124831869
03015 mRNA surveillance pathway
124831869
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vum03019
]
124831869
Messenger RNA biogenesis [BR:
vum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
124831869
mRNA cycle factors
P-body specific factors
124831869
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MIF4G
Upf2
Motif
Other DBs
NCBI-GeneID:
124831869
NCBI-ProteinID:
XP_047161918
LinkDB
All DBs
Position
Unknown
AA seq
1112 aa
AA seq
DB search
MDELRSVNLSKFVSEAVTAICDAKLRSSDIQAAVQICSLLHQRYKDFAPSLIQGLLKVFS
PGKPGDESDADRNLKAMKKRSTLKLLLELFFVGVIEDGGIFINIIKDLTNGEQLKDRDAA
QTSLTLLSSFARQGRIFLGLSVSGPEIHEEFFKGLNITADQKKVFRKACYSFYDASAELL
QSEHSSLRLMEHENSKILNAKGELSDENIASYEKLRKSYDHLYRNVSSLAEALDMQPPVM
PEDGHTTRVTSGEEGISSASGKDSSAVEPIWDDEDTRTFYECLPDLRAFVPAVLLGETEP
KSSDQSAKGQDQPTEIVPESDKGQQTTHESGEISIESNALPEAESTERVKEKEEKEKSKE
LDREKEKEKDNDKKGENEKDKLRSLEGTNLDALLQRLPGCVSRDLIDQLTVEFCYLNSKS
NRKKLVRALFNVPRTSLELLAYYSRMVATLSTCMKDVSSILLQMLEEEFNFLINKKDQMN
IETKIRNIRFIGELCKFKIASPGLVFSCLKACLDDFTHHNIDVACNLLETCGRFLYRSPE
TSIRMSNMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPERSARVAKVRPPLHQYIRKLL
FSDLDKSTIEHVLRQLRKLPWNECETYLLKCFMKVYKGKYGQIHLIASLAAGLSRYHDEF
AVAIVDEVLEEIRVGLELNDYSMQQRRIAYMRFLGELYNYEHVDSSVIFETLYLILVYGH
GTSEQDVLDPPEDCFRIRLIITLLETCGHYFDRGSSKRKLDRFLIHFQRYILSKGALPLD
IEFDLQDLFADLRPNMARYTSIEEVNAALVELEEHDRIVSADKASGEKHSDNEKSSSRTT
STTTVVGNGQRIDNGTEENGVQDDVNDSETDSGSDTIDVEGHDDEELDEENQDDGCETED
DEDDDDDGPGPATDEEDEVHVRQKVTEVDPLEEADFDQELKAVVQESMEQRRQELRGRPT
LNMMIPMNVFEGSTKDHHGRGVSGESGDEELDKDTGGNKEVQVRVLVKRGNKQQTKQMFI
PRNSSLVQSTKQKEAAELQEKEDIKRLVLEYNDREEEELNGLGTQPANWMQSVGNKTGGR
GSTLEGNSGRGSGSRHRHHNYSGSGIYYSRRK
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atggatgagttgagaagtgtcaacttaagcaaatttgtaagtgaagccgtgactgcaata
tgtgatgccaaacttagaagttctgatatacaagctgcagttcagatttgttctttgctt
catcaaaggtacaaggacttcgcaccaagcctgattcaagggcttctcaaagtcttctct
cctggaaagcctggtgatgagtcagacgctgatagaaacttgaaggcaatgaagaagcgc
agcaccctgaaacttctattggaacttttctttgttggagttattgaagatggtggcatt
tttataaatatcataaaagatcttacgaatggggaacagctgaaagatcgggatgctgca
caaacaagtttgacccttctttctagttttgctcgtcaggggagaatttttcttggactc
tctgttagtgggccggaaattcatgaagagttttttaaaggccttaacatcacagccgat
cagaagaaagttttccggaaagcatgctattccttttatgatgcttctgctgaactactt
cagtctgagcattcttcacttcgattaatggagcatgaaaattcaaagattttgaacgca
aaaggagagcttagtgatgaaaatattgcttcatatgaaaagcttcgtaaatcctatgac
catttatacagaaatgtttcatcattagcagaagcacttgatatgcagcctcctgtaatg
ccagaggatggacacacgactagggttaccagtggtgaggagggtatttcttctgcttct
ggtaaagattcttctgctgttgaaccaatatgggatgatgaagatacaaggactttctat
gaatgtttacctgatcttagagcgtttgttcctgctgtgcttttgggagaaacagagcca
aaaagcagtgatcaatctgcaaagggtcaagaccaaccaactgaaatagtacctgaatca
gacaaaggtcaacagaccacccatgaaagtggagagatctctatagagtctaatgctttg
ccagaggcagaaagcacagaaagagtgaaggagaaggaagaaaaagaaaagtctaaagaa
ttggacagagagaaggaaaaagaaaaagataatgataaaaagggggaaaatgaaaaagac
aaactcagaagtcttgaagggacaaatttggatgctctactgcagaggcttcctggttgt
gtgagccgggaccttatagatcaattaactgttgagttctgttatctgaattcaaaatca
aatcgaaaaaagcttgtgagggctctgttcaatgtgccaaggacatctctagaactgtta
gcatattattcacgcatggttgccacactctcaacttgtatgaaggatgtctcctccatt
ttgttacaaatgctggaggaggaattcaatttcttaataaataaaaaggaccagatgaac
attgagacaaagataaggaacatcaggttcattggagaactttgcaagttcaaaattgct
tctcctggcctagttttcagttgtttgaaggcctgtttagatgattttacacatcacaac
attgatgtagcttgcaatcttcttgaaacatgtggccgttttctgtatcggtctccagaa
actagtataagaatgagtaacatgttggagatactgatgcgcttgaaaaatgtaaaaaat
ttggatccgagacatagcactttagtggagaatgcatactacctttgcaaaccaccagaa
agatctgcacgagtagctaaagttcgtcctccattgcatcagtatatcagaaaattactt
ttctctgatcttgacaagtctaccattgagcatgtgctgaggcaactgcgtaaattaccc
tggaatgaatgcgagacatatcttttgaagtgcttcatgaaggtctacaaaggaaaatat
ggtcagatccacctcattgcatctcttgctgctggattaagtcgctatcatgatgaattt
gctgtagctattgttgatgaggttcttgaggagattagagttgggctggagttaaatgac
tacagtatgcagcaaagacgcattgcttacatgcgatttttaggggagctttacaactat
gagcatgtagactcttctgttatttttgagacactttatctcattctcgtctatggtcat
gggacatcagagcaagatgtacttgatccacctgaagattgttttcgcataaggttgatc
attactctacttgaaacttgtgggcattactttgatcgtggctcttctaagaggaaactt
gatcggttcctaatacacttccagaggtatattttaagcaaaggagcactacctctggac
attgaatttgacttacaggatctgtttgcggacttacgacccaatatggctcgttacact
tctattgaagaagtgaatgcagctctagtagaacttgaggaacatgatcggatagtttct
gctgataaggctagtggtgaaaaacattctgacaatgagaagtcttcaagtaggaccact
tccactactactgtggttggcaatggacagagaattgataatggtacggaggaaaatgga
gtgcaagatgatgttaatgacagtgagactgattcagggagtgacacaattgatgtagag
ggtcatgatgatgaagagttggatgaagagaatcaagatgatggctgtgaaactgaggat
gatgaagatgatgacgatgatgggcctggacctgctaccgatgaggaggatgaagtgcat
gtgagacaaaaagtgacggaggtggaccctctggaagaggctgatttcgatcaggagctc
aaggctgtagtgcaggagagtatggaacaaagaaggcaagaactacggggtcgtcctaca
ttgaacatgatgattccaatgaatgtctttgagggatcaaccaaggatcaccacgggagg
ggagttagtggggaaagtggtgatgaggaattggacaaggatactggtggaaacaaagag
gttcaggtgagagttcttgtgaagcgtggaaacaagcagcaaacaaagcagatgttcatc
cctcggaattcctcactggtgcagagtacaaaacagaaagaagcagccgagcttcaagag
aaagaagacatcaagaggcttgttttggagtataatgacagagaagaggaggagcttaat
ggattagggacccagccagcaaactggatgcagagtgtaggtaacaagactggtggccgt
ggtagcactttggaaggaaacagtggcaggggtagtggatcaagacatcgacatcataac
tattctggcagtggaatatattatagcagaagaaagtga
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