Vigna umbellata (ricebean): 124832006
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Entry
124832006 CDS
T09662
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
124832006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vum03019
]
124832006
03012 Translation factors [BR:
vum03012
]
124832006
Enzymes [BR:
vum01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
124832006
Messenger RNA biogenesis [BR:
vum03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
124832006
Translation factors [BR:
vum03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
124832006
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
T2SSE
AAA_16
AAA_19
ATPase
Dicer_dimer
ABC_tran
PhoH
Motif
Other DBs
NCBI-GeneID:
124832006
NCBI-ProteinID:
XP_047162066
LinkDB
All DBs
Position
Unknown
AA seq
1183 aa
AA seq
DB search
MPMAYSGIFQGFFRFKTMSRLRCTPLRPYFSSISITPLHRTAIRLRSSSTALKVVNVTRP
RTVVRQGTVTLPFWHQRSSSYGRFAYQDVSSDDSDVEFASHPSHSQQVGDSTLENIDEWR
WKLTMLMRSKDELEVVSREKKDRRDFEQLSTLATRMGLYSRQYARVVVFSKAPLPNYRPD
LDDKRPQREVVLPFDVHKEVDARLHAHLSQKATASKWSYLNDSLHKSSDNINIPANKGMH
EQPEPLTPNSVVKEKILQRRSLQLHHRQQDWQESPEGQKMLKFRRSLPAFKEKDAFLRLI
SENQVVVVSGETGCGKTTQLPQYILESETEAARGAVCNIICTQPRRISAMSVSERVAAER
GEKLGESVGYKVRLEGMKGRDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNE
DFLLIVLKEILPHRPDLRLVLMSATLNAELFSSYFNGAPTMHIPGFTFPVRAHFLEDILE
RTRHRLTPYNQIDDYGQEKTWKMQKQAQAFRRKKSQIASAVEDALEVADFKGYSLRTQDS
LSCWCPDSIGFNLIEHVLCHIVKNERPGAVLVFMTGWDDINSLKDQLQAHPLLGDQSKVL
LLACHGSMASSEQKLIFENPEGGVRKIVLATNMAETSITINDVVFVVDSGKAKETSYDAL
NNTPCLLPSWISKAAARQRRGRAGRVQPGECYHLYPRCVYDAFADYQLPELLRTPLQSLC
LQIKTLQLGSISEFLSKALQPPEPLSVENAVEYLKIIGALDGNENLTVLGHKLAMLPVEP
KLGKMLILGTIFKCLDPIMTVVAGLSVRDPFVTPSDKKDLAESAKAQFAAREYSDHLALV
RAYEGWKDAETQQAGYEYCWRNFLSSQTLKAIESLRKQFFYLLKDIGLVNDKPETYNAWS
HEVHLIRAVICAGLFPGISSVMNKDKSIALKTMEDGQVLLYSSSVNGCVPRIPYPWLVFN
EKVKVNSVFLRDSTGISDSVLLLFGGNVSRGGLDGHLKMLGGYLEFFMKPELANTYLSLK
MELEKLIQKKLQDPTQETQSHSQLLSAVRLLVSEDHCDGRFVFGRQVLSQVKKETNSKSG
VEAENFKNQLQSFLNRAGHDSPTYKTKQLKNSQFRSTVIFNGLNFVGQPCSNKKLAEKSA
AAEALLWLKGDSHSSDGIDHASVLLKKSNNKSRKKSFSGAKWS
NT seq
3552 nt
NT seq
+upstream
nt +downstream
nt
atgcctatggcatattccggcatatttcagggcttcttcagattcaaaaccatgtcgcgg
cttcgctgcactcctctcagaccttacttttcatccatttccatcactcctcttcaccgc
accgccattcgcctccgctcctcctccaccgcgcttaaagttgtcaacgtcacgcgcccg
aggaccgtcgtgcgccaggggaccgttacgttgccgttctggcaccagcgcagctccagc
tatggtcgttttgcgtaccaggatgtgtccagtgacgactccgatgtggaattcgcttct
catccctctcatagccaacaagtgggtgattcaacgctcgagaacattgacgagtggaga
tggaagctgaccatgcttatgcgctccaaagacgaactagaagtggtgtccagagagaag
aaggaccgtcgcgacttcgagcagctttccactttggctaccaggatgggtttgtatagc
cggcaatatgcaagagttgtcgtgtttagcaaggcgcctttgccaaattaccgccctgat
ttggatgataaacgcccacagagagaggtagtcttaccatttgatgttcataaagaagta
gatgcccgtctccatgcccatctctcacaaaaggctactgcaagcaagtggagttatttg
aatgactcattgcataaatcaagtgataatataaacattccagctaataaaggaatgcat
gaacagccagaacccttgactcccaatagtgttgtcaaggagaaaatcctgcaacgaaga
agtttgcaactgcatcatcggcaacaagattggcaggaatctcctgaagggcaaaagatg
ctcaaatttcgtagaagtcttcctgctttcaaagagaaggatgcatttttgagacttatt
tcagagaatcaggtcgttgttgtctcaggtgaaactggttgtggtaagaccacacaactt
cctcaatacatattagaatctgaaaccgaagctgcacgcggagctgtatgtaacataatt
tgtactcagcccagaagaatatctgctatgtctgtttctgaaagagttgcagcagaacgt
ggggagaagttaggagaatctgttggatacaaagttcgtttggagggtatgaaagggaga
gatacccgtcttcttttttgcaccactggtgtattactgcggagactgcttgtagatagg
aatttaaaaggtgtaactcatgttattgtcgatgaaattcatgaacgtggaatgaatgaa
gattttcttctcattgtcctgaaggaaattcttcctcatcgacctgatttgagattggtt
ttgatgagtgcaaccttaaatgctgagcttttttcttcatactttaatggtgctccaact
atgcatattcctggttttacatttccagttcgagcacattttcttgaggatattctggaa
agaactagacatcggttgacaccttataatcaaattgatgactatggtcaagaaaaaacg
tggaaaatgcagaaacaagctcaagctttcagaagaaaaaagagccaaattgcttctgct
gttgaggatgctttagaagttgcggactttaagggatatagcctacgcacccaagattca
ttgtcctgttggtgccctgactcaattggttttaaccttattgaacatgtgctttgtcac
attgttaagaatgaaaggccaggagctgttttggtttttatgactggttgggatgatata
aactctttgaaggatcaacttcaagctcatcctttgttgggtgatcagagcaaagtattg
cttcttgcatgccatggctccatggccagctctgagcagaagttgatatttgaaaatcct
gaaggaggggtgaggaaaattgttctggcaactaacatggctgagactagtattaccatt
aatgatgttgtctttgtggttgactctggaaaagcaaaagaaacatcatatgacgcatta
aataacactccttgtttgcttccatcttggatctcaaaagctgcagcccggcagaggaga
ggaagggctggtcgtgttcagcctggcgaatgctaccatctttatcccagatgtgtttat
gatgcttttgctgattatcaattgccagagcttttgagaacacctttgcaatccttgtgc
cttcaaatcaaaactctacaacttggaagcatctctgagtttttatctaaagctctacag
ccaccagagcctctatcggttgaaaatgctgttgaatatttgaagattattggggcctta
gacgggaatgaaaatttaacagttttagggcacaaattggcaatgcttcctgtagaaccc
aaacttggcaagatgctcattttaggaaccatcttcaagtgtttggatcctataatgact
gttgttgctggtctaagtgtaagagatccatttgtgacgccatctgacaagaaggatctt
gcagagtctgccaaagcccaatttgctgctcgtgaatatagtgatcatcttgcccttgtc
cgggcttatgagggttggaaagatgctgagacacagcaggctggttatgagtactgttgg
cgaaattttctttcttctcaaacacttaaggccattgagtctcttcgaaagcaattcttt
tacttgctcaaagatattggtctggtcaatgacaagcctgaaacctacaatgcatggagt
catgaagtgcatctcatccgagcagtcatctgtgcgggtttgtttcccggaatatcttct
gttatgaacaaagataagtcaatagcactgaagacaatggaggatggtcaggttcttttg
tattctagctctgtaaatggctgtgtacccagaattccatacccatggttagtgtttaat
gaaaaggtgaaagtgaattcagtattcctcagagattcaactggtatatctgattcggtg
cttctcttatttggtgggaatgtatccagaggtggacttgatggtcacctgaaaatgttg
ggaggctatttggagtttttcatgaaaccagaattagccaatacttacttaagcttaaag
atggaactggaaaaattgatacagaaaaagcttcaggatcccacgcaggaaacacaatcg
catagtcagctcctttcagctgttagattgttggtttcagaagaccattgtgatggtagg
tttgtctttggtcgccaagtcctatcacaggtaaagaaggaaacaaactccaaaagtgga
gtcgaggctgaaaattttaaaaatcaacttcagtcatttcttaacagagctggacatgat
tcaccaacttacaaaacaaagcagctgaaaaacagccaattccgttctactgtcatattt
aatgggttgaattttgttggtcagccttgcagcaacaaaaaattagcagaaaaatctgct
gctgctgaggctcttctatggttgaaaggggatagccattcatctgatggtattgaccat
gcatcagttcttttgaagaagagcaacaataaaagtaggaagaaatcatttagtggcgct
aagtggagttga
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integrated database retrieval system
