Vigna umbellata (ricebean): 124832817
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Entry
124832817 CDS
T09662
Name
(RefSeq) polyadenylate-binding protein 2-like
KO
K13126
polyadenylate-binding protein
Organism
vum
Vigna umbellata (ricebean)
Pathway
vum03015
mRNA surveillance pathway
vum03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
vum00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
124832817
09123 Folding, sorting and degradation
03018 RNA degradation
124832817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
vum03019
]
124832817
03041 Spliceosome [BR:
vum03041
]
124832817
Messenger RNA biogenesis [BR:
vum03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
124832817
mRNA cycle factors
Stress granule specific factors
124832817
Spliceosome [BR:
vum03041
]
Complex C
Other components
Complex C specific factors
124832817
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RRM_3
RRM_5
RRM_Nup35
RRM_7
RRM_MARF1
RBD_DGKtheta
DUF5062
SET1_RBD
Motif
Other DBs
NCBI-GeneID:
124832817
NCBI-ProteinID:
XP_047163080
LinkDB
All DBs
Position
Unknown
AA seq
651 aa
AA seq
DB search
MAQIQAQQHQGPVSAPPNGVAPAPNANQFVTTSLYVGDLEQNVNDSQLYDLFSQVGQVVS
VRVCRDLTTRRSLGYGYVNYSNPTDAARALDVLNFTPLNSKSIRIMYSHRDPSIRKSGTA
NIFIKNLDKAIDHKALHDTFSSFGHILSCKIATDGSGLSKGYGFVQFDNEESAQNAIDKL
NGMLINDKQVYVGPFLRKQDRENALSKTKFNNVYVKNLSDSTTDEELKKIFGEHGIITSA
VVMRDADGKSKCFGFVNFENPDDAAKAVEGLNGKKFDEKEWYVGKAQKKSERELELKGRF
EQSIKEAADKFQGVNLYLKNLDDTLSDENLKEMFSEFGTITSYKVMRDPNGISRGSGFVA
FSTPEEASRALAEMNGKMIAGKPLYVALAQRKEERRARLQAQFSQMRPVAISPSVGPRMP
LYPPGAPGLGQQFLYGQGPPAMIPPQAGFGYQQQLVPGMRPGGGPMPSFFVPLVQQGQQG
QRPGGRRGAGPVQQPQQPVPMMQQQMLPRGRVYRYPPGRNMQDVPLPGVAGGMMSVPYDM
GGLPIRDAVGQPMPIQALATALANAPPEQQRTMLGEALYPLVDQLEHDAAAKVTGMLLEM
DQPEVLHLIESPDALKAKVAEAMDVLRNVAQQQTNPADQLASLSLNDNLVP
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagattcaggcacagcagcatcaaggtccagtttcggctccgccaaacggcgtc
gcaccggcgccgaacgcgaaccagtttgtgactacgtcgctgtacgtaggcgatcttgaa
cagaatgtcaacgactcgcaactctatgatctgttcagtcaggtcggacaggtcgtttcg
gttcgtgtctgcagggacttgaccacgcgtcgttcactcggctatggctatgtcaattac
agtaaccctaccgatgcggcgagggcattggatgtgctgaatttcactcccctgaacagc
aaatcgattaggatcatgtattctcatcgggatcctagtattcggaagagtggtactgcg
aatatttttatcaagaatttggataaggctattgaccacaaggccttacatgatactttt
tcttcttttggacacattctttcttgcaaaatagcaactgatgggtctggcctgtctaaa
ggttatggttttgttcaatttgacaatgaagagtctgcacagaatgctattgacaagtta
aatggcatgctgatcaatgataagcaggtctatgtaggtcctttcctgcgaaagcaagat
agagagaatgctctcagtaagacaaaattcaataatgtctatgtgaaaaacctatcagat
tcaaccacagatgaagagttgaagaaaatttttggagaacatggtatcattactagtgct
gtagtaatgagagatgcggatggtaaatctaagtgttttggtttcgtcaattttgaaaac
ccagacgatgctgccaaagctgttgaggggcttaatgggaagaaatttgatgagaaggag
tggtatgttggaaaagcccagaaaaaatctgagcgtgaacttgaattgaaaggaaggttt
gagcagagtatcaaggaagctgctgacaaatttcagggtgtgaacttgtatctcaagaac
ttggatgatactcttagtgatgaaaatcttaaagaaatgttttctgagtttggtacaata
acttcatacaaggtaatgcgagacccgaatggaattagtagaggatctggatttgttgca
ttttcaactcctgaagaagcatctcgggctcttgctgagatgaatggtaaaatgattgct
ggaaagcctctctacgttgccctggcacagagaaaagaagagagaagagcaaggttacag
gcacagttttcacagatgaggcctgttgcaatttcgccatctgttggacctcgaatgcct
ctctatcctcctggtgctcctggactaggacaacaatttttgtatggtcaaggaccacca
gccatgattcctccccaagctggatttggttaccaacagcagctagttcctggaatgagg
cctggtggcggtcctatgcctagcttctttgttcctctggttcagcaggggcagcaagga
cagcgcccaggtggacgccgaggagctggtcctgtgcaacaacctcaacagccagtgcca
atgatgcagcagcagatgcttccaaggggacgagtctatcgttaccctcctggccgcaac
atgcaagatgtcccacttccaggtgtagctggtgggatgatgtctgtcccgtatgacatg
ggtggtctgccaatccgtgatgctgtgggacagccaatgcctattcaagctctggctacg
gcccttgcaaatgccccacctgagcagcagaggactatgctgggtgaagctttatacccg
ctggtggatcagctggaacatgatgcagcagcaaaggttactggcatgcttttggagatg
gaccagcctgaagtgctacatctgatcgagtcaccggatgctctgaaggcgaaagttgct
gaagccatggatgtgttgagaaatgttgctcagcagcaaaccaaccctgctgatcaacta
gcttcactctctctcaatgacaatcttgtcccttag
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